complearn 0.6.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (104) hide show
  1. data/AUTHORS +13 -0
  2. data/COPYING +340 -0
  3. data/ChangeLog +0 -0
  4. data/INSTALL +231 -0
  5. data/Makefile +352 -0
  6. data/Makefile.am +76 -0
  7. data/Makefile.in +352 -0
  8. data/NEWS +7 -0
  9. data/README +0 -0
  10. data/aclocal.m4 +104 -0
  11. data/bin/Makefile +209 -0
  12. data/bin/Makefile.am +8 -0
  13. data/bin/Makefile.in +209 -0
  14. data/bin/labeltree +68 -0
  15. data/bin/labeltree.in +68 -0
  16. data/bin/makesvm +70 -0
  17. data/bin/makesvm.in +70 -0
  18. data/bin/maketree +98 -0
  19. data/bin/maketree.in +98 -0
  20. data/bin/ncd +43 -0
  21. data/bin/ncd.in +43 -0
  22. data/bin/ncdmatrix +54 -0
  23. data/bin/ncdmatrix.in +54 -0
  24. data/bin/ncdvector +50 -0
  25. data/bin/ncdvector.in +50 -0
  26. data/complearn-0.6.2.gem +0 -0
  27. data/complearn.gemspec +57 -0
  28. data/config.log +597 -0
  29. data/config.status +1082 -0
  30. data/configure +4922 -0
  31. data/configure.ac +91 -0
  32. data/confstat5FpLBf/config.h +65 -0
  33. data/confstat5FpLBf/subs-1.sed +50 -0
  34. data/confstat5FpLBf/subs-2.sed +13 -0
  35. data/confstat5FpLBf/subs.frag +0 -0
  36. data/confstat5FpLBf/subs.sed +59 -0
  37. data/confstat5FpLBf/undefs.sed +24 -0
  38. data/doc/FAQ.txt +67 -0
  39. data/doc/Makefile +286 -0
  40. data/doc/Makefile.am +11 -0
  41. data/doc/Makefile.in +286 -0
  42. data/doc/devguide.txt +15 -0
  43. data/doc/example.complearnrc +14 -0
  44. data/doc/examples.txt +35 -0
  45. data/doc/man/Makefile +255 -0
  46. data/doc/man/Makefile.am +11 -0
  47. data/doc/man/Makefile.in +255 -0
  48. data/doc/man/complearn.5 +91 -0
  49. data/doc/man/labeltree.1 +35 -0
  50. data/doc/man/makesvm.1 +60 -0
  51. data/doc/man/maketree.1 +58 -0
  52. data/doc/man/ncd.1 +51 -0
  53. data/doc/man/ncdmatrix.1 +40 -0
  54. data/doc/man/ncdvector.1 +42 -0
  55. data/doc/readme.txt +101 -0
  56. data/doc/userguide.txt +46 -0
  57. data/examples/genes/blueWhale.txt +1 -0
  58. data/examples/genes/cat.txt +1 -0
  59. data/examples/genes/chimpanzee.txt +1 -0
  60. data/examples/genes/finWhale.txt +1 -0
  61. data/examples/genes/graySeal.txt +1 -0
  62. data/examples/genes/harborSeal.txt +1 -0
  63. data/examples/genes/horse.txt +1 -0
  64. data/examples/genes/human.txt +1 -0
  65. data/examples/genes/mouse.txt +1 -0
  66. data/examples/genes/rat.txt +1 -0
  67. data/ext/Makefile +167 -0
  68. data/ext/Quartet.c +399 -0
  69. data/ext/Quartet.h +62 -0
  70. data/ext/TreeScore.c +244 -0
  71. data/ext/TreeScore.h +3 -0
  72. data/ext/config.h +65 -0
  73. data/ext/config.h.in +64 -0
  74. data/ext/extconf.rb +3 -0
  75. data/ext/lib/CompLearnLib/CLConfig.rb +241 -0
  76. data/ext/lib/CompLearnLib/CompressionObject.rb +59 -0
  77. data/ext/lib/CompLearnLib/CompressionTask.rb +99 -0
  78. data/ext/lib/CompLearnLib/DistMatrix.rb +18 -0
  79. data/ext/lib/CompLearnLib/FoundComp.rb +10 -0
  80. data/ext/lib/CompLearnLib/FoundComp.rb.in +10 -0
  81. data/ext/lib/CompLearnLib/Ncd.rb +248 -0
  82. data/ext/lib/CompLearnLib/RunEnv.rb +150 -0
  83. data/ext/lib/CompLearnLib/Task.rb +39 -0
  84. data/ext/lib/CompLearnLib/TaskMaster.rb +13 -0
  85. data/ext/lib/CompLearnLib/TaskMasterMPI.rb +112 -0
  86. data/ext/lib/CompLearnLib/TaskMasterSingle.rb +39 -0
  87. data/ext/lib/CompLearnLib/Tree.rb +300 -0
  88. data/install-sh +294 -0
  89. data/missing +336 -0
  90. data/mkinstalldirs +111 -0
  91. data/o +24 -0
  92. data/scripts/CompLearn.iss +89 -0
  93. data/scripts/CompLearn.iss.in +89 -0
  94. data/scripts/debian/changelog +6 -0
  95. data/scripts/debian/control +14 -0
  96. data/scripts/makeSetup.sh +23 -0
  97. data/scripts/makeSetup.sh.in +23 -0
  98. data/scripts/makedeb.zsh +46 -0
  99. data/scripts/makedeb.zsh.in +46 -0
  100. data/tests/alltests.rb +2 -0
  101. data/tests/bz2test.rb +516 -0
  102. data/tests/sshagent-test.rb +48 -0
  103. data/tests/tests.rb +275 -0
  104. metadata +164 -0
data/doc/man/maketree.1 ADDED
@@ -0,0 +1,58 @@
1
+ .TH MAKETREE 1
2
+ .SH NAME
3
+ maketree \- perform Quartet Tree Reconstruction on a distance matrix to produce an unrooted binary tree
4
+ .SH SYNOPSIS
5
+ .B maketree [-h] [-f
6
+ .I configfile
7
+ .B ]
8
+ .I matrix.txt treeout.dot
9
+ .SH DESCRIPTION
10
+ .B maketree
11
+ tries to find an optimal tree to represent an input distance matrix \fBmatrix.txt\fR.
12
+ It uses the Quartet Tree Reconstruction method. The program starts with a random tree, and continues to try small modifications to improve the tree score. Eventually, the tree will stop easily improving. The algorithm will then write the best tree it found to \fBtreeout.dot\fR. This is a \fB.dot\fR-format file,
13
+ which means that it can be used with the \fBgraphviz\fR package tools such as \fBdot (1)\fR or \fBneato (1)\fR. The external nodes are labelled with integers starting with 0. This file may be relabelled using the \fBlabeltree (1)\fR utility if it is to be laid out for human interpretation.
14
+
15
+ The following configuration variables are relevant to this algorithm:
16
+
17
+ .BR UnpairedPenalty
18
+ a floating-point number representing the penalty associated with leaves that do not cluster adjacent to other leaves. A value of 0, the default, means no penalty. A value above 0 (typically 0.05-0.3) indicates an additional cost associated with each of these "unpaired" nodes. Some types of distance matrices, particularly inconsistent ones, can often lead to degenerate trees that are linear and heavily imbalanced without this penalty.
19
+
20
+ .BR UseBestThirdOnly
21
+ a boolean value indicating if the quartet tree evaluation function should
22
+ restrict its calculations to only include the single best quartet out of every triple of quartets associated with each group of four labels. This option is off by default. If activated, it may speed up searches but may also lead to different results.
23
+
24
+ .BR TreesPerTry
25
+ an integer specifying the number of mutated trees to try per failure-counter increment. Default 1000.
26
+
27
+ .BR MaxFailedTries
28
+ an integer specifying how many failed batches of trees must occur in succession before the program exits. Default 10.
29
+
30
+ Input files for this program can be created by \fBncdmatrix (1)\fR. The NCD is
31
+ defined in
32
+ .BR ncd(1).
33
+
34
+ For more information on the details of this algorithm, please see
35
+ \fIAlgorithmic Clustering of Music\fR by \fBCilibrasi, Vitanyi,\fR and \fBde Wolf\fR at \fBhttp://www.arxiv.org/abs/cs.SD/0303025\fR
36
+ .SH OPTIONS
37
+ .IP -h
38
+ Print usage information and exit.
39
+ .IP "-f configfile"
40
+ Use a different configuration file than the default search locations
41
+ .SH FILES
42
+ .I $HOME/.complearnrc
43
+ .RS per-user configuration file, overrides systemwide default
44
+ .I /etc/complearnrc
45
+ .RS the systemwide configuration file
46
+ see
47
+ .BR complearn (5)
48
+ for further details.
49
+ .SH ENVIRONMENT
50
+ none
51
+ .SH DIAGNOSTICS
52
+ If any of the files cannot be read, an error will be printed and the program exits with a nonzero exit code.
53
+ .SH "SEE ALSO"
54
+ .BR ncdmatrix (1),
55
+ .BR labeltree (1),
56
+ .BR makesvm (1),
57
+ .BR complearn (5),
58
+ .BR ncd (1)
data/doc/man/ncd.1 ADDED
@@ -0,0 +1,51 @@
1
+ .TH NCD 1
2
+ .SH NAME
3
+ ncd \- compute the Normalized Compression Distance between two files
4
+ .SH SYNOPSIS
5
+ .B ncd [-h] [-f
6
+ .I configfile
7
+ .B ]
8
+ .I file1 file2
9
+ .SH DESCRIPTION
10
+ .B ncd
11
+ computes the Normalized Compression Distance between two files, which
12
+ is defined as
13
+ .TP
14
+ .B NCD(a,b) = (C(a,b) - min(C(a),C(b))) / max(C(a),C(b))
15
+ .TP
16
+ .B where
17
+ .TP
18
+ .B C(a,b) means "the compressed size of the concatenation of a and b"
19
+ .TP
20
+ .B C(a) means "the compressed size of a"
21
+ .TP
22
+ .B C(b) means "the compressed size of b"
23
+ .B ncd
24
+ will print a non-negative number 0 <= x < 1.1 representing how different the two files are.
25
+ Smaller numbers represent more similar files. The largest number is somewhere near
26
+ 1. It is not exactly 1 due to imperfections in compression techniques, but for most
27
+ standard compression algorithms you are unlikely to see a number above 1.1 in any case.
28
+ Two compressors are available by default: bzip2 and gzip. These may be selected with
29
+ an option in the \fB.complearnrc\fR, see \fBcomplearn (5)\fR for more details.
30
+ .SH OPTIONS
31
+ .IP -h
32
+ Print usage information and exit.
33
+ .IP "-f configfile"
34
+ Use a different configuration file than the default search locations
35
+ .SH FILES
36
+ .I $HOME/.complearnrc
37
+ .RS per-user configuration file, overrides systemwide default
38
+ .I /etc/complearnrc
39
+ .RS the systemwide configuration file
40
+ see
41
+ .BR complearn (5)
42
+ for further details.
43
+ .SH ENVIRONMENT
44
+ none
45
+ .SH DIAGNOSTICS
46
+ If either of the two files cannot be read, an error will be printed and the program exits with a
47
+ nonzero exit code.
48
+ .SH "SEE ALSO"
49
+ .BR ncdvector (1),
50
+ .BR ncdmatrix (1),
51
+ .BR complearn (5)
data/doc/man/ncdmatrix.1 ADDED
@@ -0,0 +1,40 @@
1
+ .TH NCDMATRIX 1
2
+ .SH NAME
3
+ ncdmatrix \- compute the Normalized Compression Distance for a group of files to create a distance matrix
4
+ .SH SYNOPSIS
5
+ .B ncdmatrix [-h] [-f
6
+ .I configfile
7
+ .B ]
8
+ .I [ filelist | dirname ]
9
+ .SH DESCRIPTION
10
+ .B ncdmatrix
11
+ computes the Normalized Compression Distance between all pairs of files in a
12
+ group. If a filelist is used, filenames must be specified one per line. If a directory name is used, all files in that directory (non-recursively) will
13
+ be used in sorted order. For a group of \fBn \fRfiles, there will be \fBn*n\fR different numbers printed. There will be \fBn\fR positive real numbers printed on each line, separated by spaces. There will be \fBn\fR of these lines printed.
14
+
15
+ The NCD is defined in
16
+ .BR ncd(1).
17
+ The resultant NCD matrix is suitable for other learning applications such as Quartet Tree Reconstruction (\fBmaketree (1)\fR) or as a Support Vector Machine Kernel Matrix.
18
+ .SH OPTIONS
19
+ .IP -h
20
+ Print usage information and exit.
21
+ .IP "-f configfile"
22
+ Use a different configuration file than the default search locations
23
+ .SH FILES
24
+ .I $HOME/.complearnrc
25
+ .RS per-user configuration file, overrides systemwide default
26
+ .I /etc/complearnrc
27
+ .RS the systemwide configuration file
28
+ see
29
+ .BR complearn (5)
30
+ for further details.
31
+ .SH ENVIRONMENT
32
+ none
33
+ .SH DIAGNOSTICS
34
+ If any of the files cannot be read, an error will be printed and the program exits with a nonzero exit code.
35
+ .SH "SEE ALSO"
36
+ .BR ncd (1),
37
+ .BR maketree (1),
38
+ .BR ncdvector (1),
39
+ .BR makesvm (1),
40
+ .BR complearn (5)
data/doc/man/ncdvector.1 ADDED
@@ -0,0 +1,42 @@
1
+ .TH NCDVECTOR 1
2
+ .SH NAME
3
+ ncdvector \- compute the Normalized Compression Distance between a file and a list of files to create a vector
4
+ .SH SYNOPSIS
5
+ .B ncdvector [-h] [-f
6
+ .I configfile
7
+ .B ]
8
+ .I testfile featurelist
9
+ .SH DESCRIPTION
10
+ .B ncdvector
11
+ computes the Normalized Compression Distance between testfile and
12
+ each of the files listed in
13
+ .B featurelist.
14
+ The NCD is defined in
15
+ .BR ncd(1).
16
+ The result will be printed as a single line of nonnegative real numbers separated by spaces. If a directory is given, the files will be sorted in alphabetical order. The NCD will be calculated first between testfile and the first listed file in
17
+ .B featurelist,
18
+ and this number will be printed. Then, the NCD will be calculated between testfile and the second to obtain the second number. This continues for all files in
19
+ .B filelist.
20
+ The resultant vector is a dimensionality-reduced projection of the original file suitable for use in other machine-learning techniques such as Support Vector Machines.
21
+ .SH OPTIONS
22
+ .IP -h
23
+ Print usage information and exit.
24
+ .IP "-f configfile"
25
+ Use a different configuration file than the default search locations
26
+ .SH FILES
27
+ .I $HOME/.complearnrc
28
+ .RS per-user configuration file, overrides systemwide default
29
+ .I /etc/complearnrc
30
+ .RS the systemwide configuration file
31
+ see
32
+ .BR complearn (5)
33
+ for further details.
34
+ .SH ENVIRONMENT
35
+ none
36
+ .SH DIAGNOSTICS
37
+ If any of the files cannot be read, an error will be printed and the program exits with a nonzero exit code.
38
+ .SH "SEE ALSO"
39
+ .BR ncd (1),
40
+ .BR makesvm (1),
41
+ .BR ncdmatrix (1),
42
+ .BR complearn (5)
data/doc/readme.txt ADDED
@@ -0,0 +1,101 @@
1
+ CompLearn
2
+
3
+ A compression-based data-mining toolkit by Rudi Cilibrasi ([email protected])
4
+ --------------------------------------------------------------------------
5
+
6
+ The CompLearn Toolkit enables you to do data mining using data compression.
7
+ It also allows you to do Quartet Tree Reconstruction as well as
8
+ Support Vector Machine experiments with these techniques. Using this
9
+ package, you can do powerful pattern recognition easily from your
10
+ shell command line using a simple suite of tools. Applications include
11
+ music cateogrization, text classification, handwritten digit recognition,
12
+ and evolutionary tree reconstruction. The technique is based on a
13
+ very general theoretical notion of Kolmogorov Complexity, and so is
14
+ undoubtedly applicable to many as yet unknown disciplines.
15
+
16
+ Please look at the manual pages for
17
+
18
+ maketree.1
19
+ labeltree.1
20
+
21
+ ncd.1
22
+ ncdmatrix.1
23
+ ncdvector.1
24
+
25
+ makesvm.1
26
+
27
+ complearn.5
28
+
29
+
30
+ In order to make full use this package, you should have the following
31
+ software installed:
32
+
33
+ 1) ruby-1.8.0 from http://www.ruby-lang.org/en/20020102.html
34
+
35
+ at least one but ideally both of the following compressors:
36
+ 2) ruby bz2 library from ftp://moulon.inra.fr/pub/ruby/bz2.tar.gz
37
+ and
38
+ 2) the ruby zlib (gzip) library, often included with ruby-1.8.0
39
+ under Debian it is the package libzlib-ruby1.8
40
+
41
+ 3) the AT&T "graphviz" package at http://www.research.att.com/sw/tools/graphviz
42
+
43
+ Debian users may also need the ruby1.8, ruby1.8-dev, and libruby1.8 packages
44
+
45
+ Please note that graphviz is only necessary to convert trees to postscript
46
+ layouts for human interpretation.
47
+
48
+ To compile this package, first type
49
+
50
+ ./configure
51
+
52
+ in the top level directory. Next,
53
+
54
+ cd ext/
55
+ make
56
+
57
+ to create the extension module, CompLearn.so
58
+
59
+ Now, the installation part must be done as root; starting from the ext/ dir,
60
+ su
61
+ (type your root password here)
62
+ make install
63
+ cd ..
64
+ (this should take you to the top-level of the distribution directory)
65
+ make install
66
+ exit
67
+ (leave the root shell)
68
+
69
+ If you like, you can now run some tests, or just try to follow the example
70
+ in doc/example.txt
71
+
72
+ Now go back to the top level distribution directory and make sure the
73
+ built-in tests work, if you have the Ruby Unit Testing library installed
74
+
75
+ cd ..
76
+ ruby tests/tests.rb
77
+
78
+ --------------------------------------------------------------------------
79
+ This section will only be necessary for users that must install to
80
+ nonstandard locations or for other reasons have a complicated situation.
81
+
82
+ In order to use this extension, you must add the directory containing
83
+ CompLearn.so to your RUBYLIB environment variable search path.
84
+ Also, you must put
85
+ require 'CompLearn'
86
+ in your ruby source.
87
+
88
+ The TreeScore class will be defined when you use this module.
89
+
90
+ PARALLEL MODE OF EXECUTION
91
+ --------------------------------------------------------------------------
92
+ To run this program, first make sure you have ssh-agent running.
93
+ Then, do an ssh-add for the key that will be used to start the parallel
94
+ processes.
95
+
96
+ Finally, do, for example:
97
+
98
+ ruby parstart tests/ncdTest.rb
99
+
100
+ Make sure your PATH, LD_LIBRARY_PATH, and RUBYLIB are set correctly.
101
+
data/doc/userguide.txt ADDED
@@ -0,0 +1,46 @@
1
+ CompLearn
2
+
3
+ A compression-based data-mining toolkit by Rudi Cilibrasi ([email protected])
4
+ --------------------------------------------------------------------------
5
+
6
+ Please see the manual pages:
7
+ ncd (1), ncdvector (1), ncdmatrix (1), maketree (1), makesvm (1),
8
+ labeltree(1), and complearn(5)
9
+
10
+ Here are short descriptions of what each command can do:
11
+ --------------------------------------------------------------------------
12
+
13
+ ncd <file1> <file2>
14
+
15
+ computes the Normalized Compression Distance between two files
16
+ specified on the command line.
17
+
18
+ Theoretically, this number is supposed to be between 0 and 1, but
19
+ in practical terms, we sometimes see values as high as about 1.1.
20
+
21
+ ncdvector <file1> {filelist.txt|dirname}
22
+
23
+ computes a list of ncd's according to files listed in filelist.txt or
24
+ all files in the directory dirname. in filelist.txt, each line should
25
+ be a filename
26
+
27
+ ncdmatrix {filelist.txt|dirname}
28
+
29
+ computes a square distance matrix of all pairs of files specified
30
+ as a list of files or in a directory.
31
+
32
+ maketree test.dm tree.dot
33
+
34
+ computes a best-fitting unrooted binary tree from a given distance matrix.
35
+ The distance matrix should be the output of the ncdmatrix command. The
36
+ result is put in a file called tree.dot in this example.
37
+
38
+ labeltree tree.dot {filelist.txt|dirname}
39
+
40
+ labels a tree's leaves according to a group of files. This is best
41
+ used before layout with dot or neato.
42
+
43
+ makesvm categoryfile.txt
44
+
45
+ create a pair of trainsvm.txt and testsvm.txt files for SVM experimentation.
46
+
data/examples/genes/blueWhale.txt ADDED
@@ -0,0 +1 @@
1
+ gttaattactaatcagcccatgatcataacataactgaggtttcatacatttggtatttttttattttttttggggggcttgcacggactcccctatgaccctaaagggtctcgtcgcagtcagataaattgtagctgggcctggatgtatttgttatttgactagcacaaccaacatgtgcaattaaattaatggttacaggacatagtactccactattccccccggggtcaaaaacctgtatcttttagaggatcaaacccccctccctccatacaatactaaccctttgcttagatattcaccacccccctagacaggctcctccctagatctaaaagccattttattaataaatcaatactaaatctgacacaagcccaataatgaaaatacatgaacgccattcctatccaatacgttaatgtagcttaagcactcataaagcaagacactgaaaatgtctagatgggttaaattaaccccattggcattaaaggtttggtcccagcctttctattagttcttaacaaacttacacatgcaagcgtctacatcccggtgagaatgccctctaaatcacaaagatcaaaaggagcaggtatcaagcacgctagtactagcagctcacaacgcctcgcttagccacacccccacgggacacagcagtgataaaaattaagctataaacgaaagtttgactaagttatgttaataagggttggtaaacttcgtgccagccaccgcggtcatacgattaacccaaattaatagaaacacggcgtaaagagtgttaaggagtctcatagaataaagtcaaaccttaattaagctgtaaaaagccataattaaaattaagccaaactacgaaagtgactttaatatgatctgatcacacgacagctaagatccaaactgggattagataccccactatgcttagccataaaccccagtagtcacaaaacaagactattcgccagagtactactagcaacagcttaaaactcaaaggacttggcggtgcttcatacccctctagaggagcctgttctgtaaccgataaaccccgattaacctcaccaacccttgctacttcagtctatataccgccatcttcagcaaaccctaaaagggaacgaaagtaagcataatcatcctacataaaaacgttaggtcaaggtgtaaccaatgggttgggaagaaatgggctacattttctaaactaagaatatccctatacacacgaaagtttttatgaaacttaaaaaccaaaggaggatttagtagtaaatcaagagcagagtgcttgattgaataaggccatgaagcacgcacacaccgcccgtcaccctcctcaagtaccccagctaaagccacagttcattaactcaggccaagcaacttatacgagaggagacaagtcgtaacaaggtaagcataccggaaggtgtgcttggacaaaacaagatatagcttaaacaaagcatctagtttacacctagaagattccacagcccgtgcatatcttgaaccagctctagcccacccccaccccccttttactaccatagaccaatcaaataaaacattcaccaaccttctaaagtataggagatagaaatttaaacatcagtggcgctatagaaatagtaccgtaagggaaagatgaaagaaaaacccaaaagtaataaaaagcaaagcttaccccttgtaccttttgcataatgacttaactagtaataacttagcaaagagaccttaagttaaactacccgaaaccagacgagctacttatgagcagtacctaggacgaactcatctatgtggcaaaatagtgagaagacttataagtagaggtgaaaagcctaacgagcctggtgatagctggttgtccatgaaaagaatctcagttcaacattaaatgatactaaaagccatgccaagccttgacgtacatttaactgttagtctaaaaaggtacagctttttagatatgggtacaaccttcactagagagtaaaaccaaacatacaccatagttggcctaaaagcagccatcaattaagaaagcgttcaagctcgacaataaaacaatgttttaattccaacattagacaaatcaactcctagcatgattattggactaatctatataaacatagaagcaacactgttaatatgagtaacaagaaatttttctcctagcacgagcttatattagtaactgataatatactaataattaacagcaaataaataaaatctaacactagactatttattaagacactgttaacccaacacaggagtgcattaaggaaagattaaaaaaagtaaaaggaactcggcaaacacaaaccccgcctgtttaccaaaaacatcacctctagcataaccaatattagagcactgcctgcccggtgactaatcgttaaacggccgcggtatcctgaccgtgcaaaggtagcataatcacttgttctctaattaaggacttgtatgaacggccacacgagggttttactgtctcttacttttaatcagtgaaattgacctccccgtgaagaggcggggataacaaaataagacgagaagaccctatggagcttcaattaatcaacccaaaaatcacaaccttaaaccaccaagggataacaaaattttatatgggctgacaatttcggttggggtgacctcggagcacaaaaaatcctccgagtgattaaaacttaggctcactagccaaagtgtaatatcacttattgatccaatctcttgatcaacggaacaagttaccctagggataacagcgcaatcctattctagagtccatatcgacaatagggtttacgacctcgatgttggatcaggacatcctaatggtgcagccactattaagggttcgtttgttcaacgattaaagtcctacgtgatctgagttcagaccggagtaatccaggtcggtttctatctattacgcatttctcctagtacgaaaggacaagagaaataaggccaacttcaaacaagcgccttcaaataattaatgacctagtctcaacttaataaccaagcgcaaacaagtatgcccaagaccagggccctgttgaggtggcagagttcggtaattgcataaaacttaaacctttacactcagaggttcaaatcctctccccaacaaaatgtttataattaacattctaacactcattcttcctatcctcttagccgtagcattcctaacgctagtagaacgcaaaattctaggttacatgcaattccgaaaaggaccaaacatcgtaggcccacatggcttgctccaaccctttgccgatgcaattaaactattcactaaggaacccctacgaccagctacatcctccactaccatattcattattgcaccagtactagccctagccctagccctcaccatatgaagccccctacccataccataccccctcatcaacataaacctaggagtactattcatactagcaatatccagcctagccgtctactccatcctatgatccggctgagcctctaactcaaaatatgcactaatcggggccctacgagcagtagcacaaacaatttcatatgaagtaacactagctatcatcctcctatcagtactcctaataaatggctcctacaccctatcaacactagccacaacacaagaacaactatgactactattcccatcatgacccttagccataatatgatttatctccactctagcagaaaccaatcgagctcctttcgacctaacagaaggagaatcagaacttgtatcaggcttcaacgtagaatacgcagcaggccctttcgccctatttttcctagcagaatatgccaacatcattataataaacatatttacagctattctattcctaggaacattccacaacccctgcaacccagaattatacacaacaaatcttatcatcaaaacactactactcacaatgtccttcctatgaattcgagcatcctatcctcgattccgatatgaccaactaatacatctactttgaaaaaacttccttcccctaacactagccctttgcatatgacatatctcactaccaattataactgcaagtatcccccctcaaacataagaaatatgtctgataaaagagttactttgatagagtaaataatagaggcctaaatcctcttatttctagaataataggaatcgaacctacccttaagaattcaaagttcttcgtgctaccatattacactacaatctatagtaaggtcagctaaacaagctatcgggcccataccccgaaaatgttggtttatatccttcccatactaataaacccatccatctttattatcctcctgacaacccttatcttaggtacaataatagtaatcaccagctcccactgattattagcctgaatcggcttcgaaataaacatgatagccttcatccctatcataataaaaaaccctagcccccgagccacggaagcttctaccaagtacctcctaacacaagccaccgcttccgcactactcataatggcagttattattaacctaatatactccggccaatgaaccatcacaaaattatttaacccaacagcatccacactcataacagtagccctagccatcaaattaggactagcccccttccacttctgagtcccagaagtaacacaaggaattcccctaaccacaggcctaattctattaacatgacaaaaactagcacccctatcaattctataccaaatttcaccatcaattaacctatatctaatactaaccatatccctactctccatcctagttggaggctgaggcggactaaaccaaacacaacttcgaaaaatcatggcctactcatcaatcgcccacataggatgaataacaactattctaccatataatccaaccctaacactactaaatctactaatttatatcacaatgactttcaccatattcatactatttattcaaaactcaactaccactacactatcattatcccaaacttgaaataagacacccatcatcacaacccttaccatgctcacccttctctcaataggaggactcccaccactttcagggtttatacccaaatgaataattatccaagaattaacaaaaaatgatatccttattataccaacattcatagccattacagcactactcaacctatatttctacatacgcctcacctactccacagcactaacactattcccctccacaaacaacataaaaataaaatgacaattcagccccacaaaacgagcccctctcctacccacagcaatcgtaatttccacaatactactacccctcacaccaatactctcaatcctactataggagtttaggttaaacccagaccaagggccttcaaagccctaagcaagtataatttacttaactcctgcccaataaggactgcaagactatatcttacatcaattgaatgcaaatcaaacactttaattaagctaaatcctcactagattggagggatacatctcccacgaatttttagttaacagctaaataccctaatcaactggcttcaatctacttctcccgccgcgaggaaaaaaaggcgggagaagtcccggcaggatttgaagctgcttccttgaatttgcaattcaaaatgactattcaccacaggacttggtaaaaagaggactcaacctctgtctttagatttacagtctaatacctactcggccattttacctatgttcataaaccgctgactattctcaaccaaccacaaagacatcggcaccctatatttactatttggtgcctgagcaggaatagtaggcactggcctaagcttattaatccgcgctgaactaggtcagcctggcacactaatcggagatgaccaagtctacaacgtattagtaacagcccacgccttcgtgataatcttcttcatagttatacctattataatcggcggattcggaaattgactggtccctctaatgattggagcacccgacatagccttccctcgtataaataacataagcttctgactactccctccttccttcctactcttaatagcatcctcaataattgaagctggcgcaggtacaggctgaaccgtatatccccctttagccggaaacctagcacatgcaggagcctcagtcgaccttaccattttctccttacacctagccggcgtatcctcaatcctcggagctatcaattttatcacaactattattaatataaaaccacctgccatgacccaatatcaaactccccttttcgtatgatcagtcctagtcacagcagtactactcttattatcattacctgttttagcagccggaatcaccatgctacttactgaccgaaacctaaatacaaccttcttcgaccctgcaggtggaggagatccaattctgtatcaacacttattctgattctttggccaccctgaagtatacattctaattctccctgggttcggaataatttcacacattgtgacttattactcaggaaaaaaagaacctttcggctatatgggaataatctgagctatggtgtccatcggattcttaggctttatcgtatgagcccaccatatgtttacagtaggtatagacgtcgatacacgagcatatttcacatcggctactataattattgctattcccacaggagtgaaagtcttcagttgattagcaacactacacggaggtaatattaaatgatctcctgctctaatgtgggccctgggtttcatcttccttttcacagtaggcggcctaaccggtatcgttctagccaactcatcactagatattgtcctacacgatacttactacgtagttgcccacttccactatgttctatcaataggagcagtcttcgccattataggaggctttgtccactgatttccactattctcaggatatacactcaatacaacatgagcaaaaatccacttcctaattatattcgtaggtgtaaatctaacgttctttccacagcacttcttaggcctatccggtatgcctcgacgatactccgactacccagatgcctacacaacatgaaatactatttcatctataggctcatttatttcactaacagcagttatactaataatcttcattatctgagaagcattcacatccaaacgagaagtactagcagtagacctcacctataccaaccttgaatgactaaacggatgtcctccaccatatcatacattcgaagagccagcatttgtcaacccaaaatgatcaagaaaggaaggaatcgaaccttctcccattggtttcaagccaatatcataaccactatgtctttctttataaatgagatattagtaaaaccttatataactttgtcaaagttaagttacaagtgaaaatcctgtatatctccatggcatatccattccaactaggcttccaagatgcaacatcacctatcatagaagaactcctacactttcacgaccacacattaataattgtattcctaattagctccttagttctctacattatcaccctaatacttacaaccaaactaacacatactagtacaatagacgcccaagaagtagaaactgtctgaactatcctcccagccatcatcttaattttaatcgccctaccttccctacgaatcctctatataatagacgaagtcaacaacccctccctcactgtaaaaacaataggccaccaatgatattgaagctatgagtatactgattacgaagacctaagctttgactcttacataatcccaacgtcagacctaaagccaggagaattacgactactagaagtagacaaccgagttgtcctacccatagaaataacaatccgaatgctagtctcatcagaagacgtactccactcatgagccgtaccctctctaggcctaaaaacggacgcaatcccaggacgtctaaaccaaacaaccttaatatcaacacgaccaggcctattctacggacaatgctcagaaatctgtggctcaaaccatagttttataccaatcgtcctagaactagtgcccttagaattctttgaaaaatgatctgcatcaatactataacatcattaagaagctaaatcagcgttaaccttttaagttaaagattgagagcctataactccccttaatgacatgccacaattagacacatcaacatgactccttactatcctatctatactcctaaccctttttgtattattccaactaaaaatctcaaagcactcctactcccctaaccccaaactagtaccaaccaaaacacaaaaacaacaaaccccttgaaacatcacatgaacgaaaatttatttgccccttttataatcccagtaatattaggtattcctattaccactctaatcattattctcccatctatcttattccccgcaccaaatcgactaatcaacaaccgtacaatctccatccaacaatgattaactaaactcacatcaaaacaactaataagtgtacacagtcctaaaggacaaacttgatctctaatactcatctcactgttcctatttattgcctccactaatctccttggaatattacctcactcattcacacccactacacaactctcaataaatgtaggaatggctatccccctatgagccggtactgttgccacaggcttccgtaacaaaacaaaaatatccttagcacacttactaccacaaggcacacctacttttcttattcctatgctagtaattatcgaaaccattagtctattcattcaaccagtagcactagccgtacgactaactgccaacatcacagcaggtcacttactaatacatctaattggagaaacaacccttgtactaataagtaccagcctatttacagccattatcactttcactatccttgctctactaaccattcttgaatttcgtgtcgccctcattcaagcttacgtattcaccctcctagtaagcctataccttcatgataacacataatgacccaccaaacccactcatatcacatagtaaatcccagcccttgacccctcactggagctctatcagcacttctcataacatcaggcctaattatatgattccatttcaactcaataattttactaaccctaggcttatcaacaaacatcctaacaatataccaatgatgacgcgatattatccgagaaagcaccttccagggccaccatacaccaaccgtccaaaaaggactacgatacggaataatcctattcattgtctcagaagtcctatttttcacaggcttcttctgagccttttaccactcaagccttgcccccactccagaactaggcggatgttgaccaccaacaggcatccaccctttaaatcccttagaagttcccctcctcaacacttccgtactactagcctctggcgtatctattacctgagctcaccatagcctaatagaaggaaaccgcaagcacatacttcaagccctcttcatcacaattgcactaggtctttacttcaccctactacaagcatcagagtactacgaagcccctttcacaatctcagacggaatttatggctccaccttctttgtagccacaggttttcacggattacacgtaatcattggatctactttccttattgtttgcttcctacgccaagtaaaattccactttacatcaaaccatcatttcggctttgaacgtgccgcttgatactgacactttgtagacgttgtatgattatttctttacgtatctatctattgatgaggttcctagttcttttagtattaacaagtacaactgacttccaatcagttagtttcggtataccccgaaaaagaacaataaaccttctactaacactactaacaaacacaacactagccctattactcgtattcatcgccttctgactcccccaactaaacgtatacgcagaaaaaacaagcccatacgagtgcggattcgaccctataggatcagctcgcctacctttctccataaaatttttcctagtagccattaccttcctcctttttgatctagaaatcgccctcctgcttccccttccttgagctatccaatcaaacaacctaaacacaatactcacaatagccttattcttaatctccctactagcagctagcttagcctatgaatgaactcaagaaggcctagaatgagccgaatatggtatttagtttaaaataaaacaagtgatttcgacccactagactgtgatcaaattcacaactaccaagtgaccttaatccatataaatgttctcatagccttcagcatatcccttgtaggcctattaatatatcgatcccacctaatatccgcattactctgtctagaaggcatgatactatcacttttcgttctagcagccctcacaatcctaaattcacacttcaccttagctaacatgatacctatcatcctcctagttttcgcagcttatgttgcagccatcggactagccctactagtcatagtctccaacacatatggcactgactacgtacaaagcctcaacctcctccaatgctaaaatttattattcctacgattatactaatacccctaacctgattatcaaaaaataatctaatctgaattaactccacagcccacagtctcttaattagtttctcaagcctactcctccttaaccaactcaacgataacagcctcaattactcactaatcttcttctccgaccccctttccaccccactcctaatattaacaatatgacttcttcccctaatactgatagcaagccaatcccatcttatcaaagaaccacctgtccgaaaaaaactctacatcacaatactaatcatactacaagccctcctaatcataacatttactgccaccgaactaatcctcttttacatcatatttgaagctacactaatccctactcttattattatcacccgctgaggtaaccaaacagaacgacttaacgcaggactatatttcctgttctacacattaattggatccctcccactattagtagcactagtatatctacaaaacacaacgggatccttaaacttcctacttctacaacactgagccaaaccactatccgcctcctgatctaatatcttcatatgactagcttgcatgatagccttcctagtaaaaatacccctttatggactacacctctgactacccaaagcacatgtagaagcccccatcgcaggctccatagtccttgcagccgtactactaaaacttggaggctacggcatactacgaattacatccatgcttaatcccctaacagaacacatagcatatccattcctcatgctttccctttgaggaataatcatgaccagctctatctgcttacgccaaacagacctaaaatcactcattgcgtactcctcagtcagccatatagcactcgtcattgcagccatcctcatccaaactccctgaagctatataggggctaccgctctaataattgcccatggccttacatcctctatactattctgtctagcaaactcaaactatgagcgcatccatagccgaactataattttagcccgaggcctacaagtcctcctaccactaatagccacctgatgactactagcaagcctaacaaatcttgctttacccccaaccatcaacctagtcggagaattactcgtagtcatatcagtcttctcatgatcaaaccccactatccttctaataggagcaaacattgtaatcaccgctctctataccctatatatactaatcataacacaacgtggcaaacacacacaccacatcaacaatattatcccctccttcacacgagaacatgccttaatagccctacacattattcctcttctactcctatcactaaaccccaaaatcatcttaggtcccctttactgtaagtatagtttaaaaaagacattagtttgtgaaactagcgatagaagattaaaacttcttacttaccgaaaaagtatcgcaagaactgctaactcatgctcccacacctaacagctgtggctttttcaaacttttacaggatagtagttatccattggtcttaggaaccaaaaaattggtgcaactccaaataaaagtaataaacttatttacctccttcgtcctgcttacactgctaatcctattcacccctatcatagtgtccaatacagatccacacaaaaacaacaaataccaatcctatgtaaaaaacattgtcttttgcgccttcatcaccagtttaatccccgcaataatatacctccacacaaaccaagaaacactcatctcaaactgacactgaatcaccattcaaaccctcaaactaacacttagctttaaaatagactacttttcactcatatttataccagtagccctatttattacatgatccatcatagagttctcaatatgatatatacactccgacccctacatcaaccaattctttaaatacctactccttttcctaattactatactaatccttgttacagctaacaacctcttccaactctttattggctgggaaggagtaggaatcatatccttcttactcattggctggtggttcggacgaacagacgcaaacacagccgccctccaggcaatcctatacaatcgcatcggagacatcggactcctcgcatcaatagcatggtttctctccaacataaacacatgagacctacaacaaatctttatactcaatcaaaaccccctaaattttcctcttataggactcgtactagccgcagctggaaaatcagcccaattcggactccacccttgactcccatcagcaatagaaggtcctaccccagtctcagccctactccactcaagcacaatagttgtagcaggaatcttcctgctagtccgcttctaccccttaatagaaaataacaagctaatccaaacagtaactctctgcttaggtgctatcacaaccctattcacagccatctgtgccctcacccaaaatgacatcaaaaaaatcattgctttctctacctctagccaactaggcctaataatagtaacaattggcctcaaccaaccttacctagcattcctacatatttgcacacacgccttctttaaagccatattattcctatgttctggctccatcattcataacctaaacaacgagcaagatatccgaaaaataggaggactatttaaggccctcccattcaccacaactgcccttatcattggatgccttgcattaacaggaataccattcctcaccggattctactccaaagatcccattattgaagccgccacttcgtcttataccaacgcctgagccctgttactaaccttaaccgccacctcccttacagccgtctatagcactcgcattatcttcttcgcactactaggacaacctcgcttccctccctccacaaccatcaatgaaaataacccactattaattaaccctatcaaacgattactcatcggaagcatcttcgctggcttcatcttatccaacagcatccccccagtaatcacacccttaataaccatacccctacatctaaaactaaccgccctcacaataacaactctaggcttcatcatcgcattcgaaattaaccttgacacacaaaatctaaaatatacacacccatcaaacccctttaaattctccaccctgctaggatacttccccacaatcatacatcgtctacctcctcaccttgacctatcaataagccaaaaactagcaacctccctactagacctaacctgactagaaactactttaccaaaaactacagcccttatccaattgaaagcctctacactaacctccaaccaacaaggcctcatcaaactctacttcttatctttcctcatcaccatcactctcagcataatcttatttaattgccccgagtaatctccataataattacaacactaacaaacaaagaccaacctgtaacaatcactaaccaaacaccataactatatagcgctgcaatccctgtagcttcttcactaaaaaccccagaacccccagtatcataaataacccaatcccctaacccatcaaactcaaacacaatcttcacctctccactcttcaaagcataaatcacaattaaagattctaccactagtcctaaaataaatgctcctaatacaactttattagaaacccaaacctcaggatactgttcagtcgccatagccgtcgtataaccaaacacaactaacattccccccaaataaatcaaaaatactatcaaccccaaaaacgaaccaccaaaacttaaaacaactccacatccagcaccaccacccacaatcaatcctaatcctccataaataggtgaaggctttgaagaaacccccacaaaactaattacaaaaataatacttaaaacaaaaacaatgtatgttaccattattctcacatggacttcaaccatgaccaatgacatgaaaaatcatcgttgttattcaactacaagaacaccaatgaccaacatccgaaaaacacacccactaataaaaatcatcaacgatgcattcattgatctccctaccccatcaaacatctcctcatgatgaaacttcggctccctactcggcctctgcttaattgtacaaatcctaacaggcctattcctagcaatacactatacaccagacacaataaccgccttctcatcagtcacacatatttgccgagacgtaaactatggctgagttattcggtacttacatgcaaacggagcctccatattcttcatctgcctctacgcccacatgggacgaggtctatactacggctcccacgcttttcgagaaacatgaaatattggagttattctactattcacggtcatagccactgcattcgtaggctacgtcctgccctgaggacaaatatcattctgaggcgcaaccgtcatcaccaacctcctatcagcaatcccatacattggtactaccctagtcgaatgaatctgaggcggtttttctgtggataaagcaacactaacacgcttctttgccttccacttcattctccccttcatcattatagcattagcaatcgtccacctcatcttccttcacgaaacaggatccaacaaccccacaggtatcccatctgacatagataaaattccattccacccctactacacaattaaagacattctaggcgccctactactaatcctaaccctactaatattaactctatttgcacccgacttactcggagacccagacaactacaccccagcaaacccactcagtaccccagcacacattaaaccagagtgatatttcctatttgcatatgcaatcctacgatcaatccccaacaaattaggcggagtcttagccctactactctcaatcctagtcctagctctaatcccaatactccacacatccaaacaacgaagcataatattccgaccctttagccaattcctgttttgagtactggtcgcagacctactcaccctaacgtggatcggcggccaacccgtagaacacccctatgtaattgtaggccaactcgcatccatcctctacttcctcttaattctagtgttaataccagtaactagtcttatcgaaaataaacttataaaatgaagagtctttgtagtataattaaatacctcggttttgtaaaccgaagaaggagacaaaccacacctccctaagactcaaggaagaagcatcacactccaccatcagcacccaaagctgaaattctatataaactattccctgaaacatgtatattgtacaataaccgcaaagccacagtactatgtccgtattaaaaaataattatctcattacatattgttatgtacttcgtgcatgtatgtacttccccataaccagttaatcagtgttatccctgtgaatatgtatacatacacatgctatgtataattgtgcattcaattatcttcaccacgagcagttaaagcccgtattaaatcttattaattttacatattacataatatttattaatagtacagtagtacatgttcttatgcatcctcaggtcaatttaaatcaaatgattcctatggccgctccattagatcacgagcttaatcaccatgccgcgtgaaaccagcaacccgcttggcagggatccctcttctcgcaccgggcccattactcgtgggggtagctatttaatgatctttataagacatctggttcttacttcaggaccatattaacttaaaatcgcccactcgttccccttaaataagacatctcgatgg
data/examples/genes/cat.txt ADDED
@@ -0,0 +1 @@
1
+ ggactaatgactaatcagcccatgatcacacataactgtggtgtcatgcatttggtattttttatttttagggggtcgaacttgctatgactcagctatgacctaaaggtcctgactcagtcaaatatattgttgctgggcttattctctatgcggggtctccacacgcacagacagtcagggtgctattcagtcaatggtcacaggacatatacttaaattcctattgttccacaggacacgggatgcgcgcacccacgtttgcgtgcacacgtgtacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtacacacgtgtacacgtacacacgtacacacgtgtacacgtacacacgtacacacgtacacacgtgtacacgtacacacgtacacacgtacacacgtacacacgtacacacgtgtacacgtacacacgtacacacgtacacacgtacacacgtatacacgcgaacgctttaatttaagtaaataactagcttaatcaaaccccccttaccccccgttaaccttatttataataatacgtgcctatttatgtcttgccaaaccccacaaacaagactagaccgtacctaaatataaggcctaagaaaacgcttataagcttaccaatcccctattattactagctactaatactaaatcataactctgttcgcagttatctatagatataccgacctgactctaattcgtccctatcgaacaacattttacatgtctacgttagccccacatcccagttaatgtagcttaaacatataaagcaaggcactgaaaatgcctagatgagtcgccagactccataaacacaaaggtttggtcctggcctttccattagttattaataagattacacatgcaagcctccgcatcccggtgaaaatgccctctaagtcacccagtgacctaaaggagctggtatcaagcacacaaccacagtagctcataacaccttgctcagccacacccccacgggatacagcagtgataaaaattaagccatgaatgaaagttcgactaagctatattaaacaagggttggtaaatttcgtgccagccaccgcggccatacgattaacccaaactaatagacccacggcgtaaagcgtgttacagagaaaaaaatatactaaagttaaattttaactaggccgtagaaagctacagttaacataaaaatacagcacgaaagtaactttaacacctccgactacacgacagctaagacccaaactgggattagataccctactatgcttagccctaaacttagatagttaccctaaacaaaactatccgccagagaactactagcaatagcttaaaactcaaaggacttggcggtgctttacatccctctagaggagcctgttctataatcgataaaccccgatatacctcaccatctcttgctaattcagcctatataccgccatcttcagcaaaccctaaaaaggaagaaaagtaagcacaagtatcttaacataaaaaagttaggtcaaggtgtagctcatgagatgggaagcaatgggctacattttctaaaattagaacacccacgaagatccttacgaaactaagtattaaaggaggatttagtagtaaatttgagaatagagagctcaattgaatcgggccatgaagcacgcacacaccgcccgtcaccctcctcaagtggtaactcccaaaaaaacctatttaaattatcacacccacaagaggagataagtcgtaacaaggtaagcatactggaaagtgtgcttggataacaagatgtagcttaaacaaagcatctggcttacacccagaagatttcatattaaactgaccatcttgagctaaagctagcccaaacatctacaaacacaactaacactagaaaataaaacaaaacatttagtcaccttataaaagtataggagatagaaatttaacttggcgctatagagaaagtaccgcaagggaaagatgaaagataaaattaaaagcaccacacagcaaagattaccccttgtaccttttgcataatgagttagctagaacaacctaacaaagagaacttcagctaggccccccgaaaccagacgagctacccatgaacaatctattacaggatgaactcgtctatgttgcaaaatagtgagaagatttgtgggtagaggtgaaaagcctaacgagcctggtgatagctggttgcccagaacagaatcttagttcaactttaaacttacctcaaaaacctaaaattccaatgtaagtttaaaatatagtctaaaaaggtacagctttttagacctaggatacagcctttattagagagtaagcataaatataaaccatagttggcctaaaagcagccatcaattaagaaagcgttcaagctcaacaatcaaagcatcttaatgtcaaaaataatgcaaccaactcctaacctaaaactgggctaatctatttaataatagaagcaataatgctaatatgagtaacaagaaatatttctccctgcataagcttatatcagaacggataaccactgatagttaacaacaagatatatataacctaaccataaacaaaatatcaaattaattgttaacccaacacaggtatgcaaattagggaaagattaaaagaagtaaaaggaactcggcaaacacaagccccgcctgtttaccaaaaacatcacctctagcatttccagtatgagaggcactgcctgcccggtgacgctagttaaacggccgcggtatcctgaccgtgcaaaggtagcataatcatttgttccctaaatagggacttgtatgaacggccacacgagggctttactgtctcttacttccaatccgtgaaattgaccttcccgtgaagaggcgggaatataataataagacgagaagaccctatggagctttaattaaccgacccaaagagaccatatgaaccaaccgacaggaacaacaaacctctatatgggccggcaatttaggttggggtgacctcggagaataaaacaacctccgagtgatttaaatctagactaaccagtcgaaagtactacatcacttattgatccaaaaaccttgatcaacggaacaagttaccctagggataacagcgcaatcctatttcagagtccatatcgacaatagggtttacgacctcgatgttggatcaggacatcccgatggtgcagcagctatcaaaggttcgtttgttcaacgattaaagtcctacgtgatctgagttcagaccggagtaatccaggtcggtttctatctatttaataacttctcccagtacgaaaggacaagagaagtgaggcccacttcaccaaagcgcctttaaccaaatagatgatataatcttaatctagacagtttatccaaacacactacccgagagctcgggtttgttagggtggcagagcccggtaactgcataaaacttaagcttttattatcagaggttcaattcctctccttaacaacatgtttataattaatgtactctcactaattattcctattctcctagctgtagccttcctaaccctagtcgaacgaaaagtgctaggctatatgcaactccgcaaaggaccaaatgtcgtaggaccatacggcctacttcaacctatcgcagatgctgtaaaactctttaccaaagagcctctccgaccccttacatcctccatattaatattcatcatagcaccaatcctagccctcacactagccctaaccatatgaatcccactacccataccatacccgctcattaacataaacctgggagtactatttatgctagctatatcaagcctagctgtttattccatcctatgatcaggatgagcctcaaattcaaaatacgccctaatcggagccctacgagccgtcgcccaaacaatctcatatgaagtcacactagccatcattctcctatcagtactactaataaacggatccttcacactagccatactaatcaccactcaagaatatatatgactaatcattcctgcatgacccctagccataatatgatttatctcaaccctagcagagaccaaccgagccccattcgacctgacagaaggagaatcagaactagtctccggattcgatgtagaatatgcagcaggccccttcgccctattcttcctagcagaatatgccaacatcatcataataaatatcctcacaacaatcctattcttcggagcattccacagcccttatataccagagctatataccattaactttacagtaaagacccttctcctaacaactactttcttatggatccgagcatcctacccacgattccgatatgaccaactaatacacctcctatgaaaaaactttctgcctctcaccctagccctatgcatatgacatgtatccctacctatcatcacagcaagcatcccacctcaaacataagaaatatgtctgacaaaagagttactttgatagagtaaaacatagaggtttaaaccctcttatttctagaataacaggaatcgaacctaatcctaagaatccaaaaatcttcgtgctaccattattacaccatattctaaagtaaggtcagctaaataagctatcgggcccataccccgaaaatgttggtttatacccttcccatactaatcaacccccctatctttattattattatattaaccgttatctcaggaactataattgtagtgacaacctcccactgacttctagtctgaattggctttgaaatgaacctattagccatcatccccatcctcatgaaaaaatacaacccacgagccatagaagcagccacaaaatatttcttaacacaagcagccgcctccataatcctaataatatgaatcattatcaatctactgcactcgggacaatggaccgtactaaaagaccttaatcccatagcatcaatcataataacaaccgctctagcaataaaactaggactagccccattccacttctgagtacccgaagttacacaaggaatttctatatcatcaggcttaattctactaacatgacaaaaaattgcaccactatcaatcctctaccaaatctcatccaccattaaccctaacctaatcctaacaatatccatcttatcagtcataatcggaggctgaggaggcctaaaccaaacacaactacgaaaaatcatagcatactcctcaatcgcccatataggctgaatgacagctatcataatgtacagccccacaataataatcttaaacctaactatctatatcattataacactaaccaccttcatactatttatacacaactccaccacaacaacagcatccctatcacaaacatgaaataaaacccctctaatcacctcactcatcctagtattaataatatccctgggaggcctccccccactctccggatttatcccaaaatgaataatcatccaagaattgactaaaaatgaattaatcataatgccaacattactagccataacagcactactcaacctatacttctacatacgactaacatacaccaccgcactaaccatgttcccctcaaacaacagtataaaaataaaatgacgatttgaatgcacaaaaaaaataaccttcctaccccctctagttgtaatatcaaccatactacttccactcgcaccaatactatctatcctggattagaagtttaggttaaactagaccaagagccttcaaagctctaagcaagtcctacagacttaacttctgcacatctaaaccattctaaggactgcaagaatctatcttacatcaattgattgcaaatcaaacactttaattaagctaagtcctcactagattggtgggctctaaccccacgaaattttagttaacagctaaatgccctaatcaactggcttcaatccacttctcccgccgtctagaaaaaaaaggcgggagaagccccggcagcgccaagctgcttctttgaatttgcaattcaacatgacattcaccgcaggacttggtaaaaagagggctcgaacctctgtctttagatttacagtctaatgcttactcagccattttacctatgttcataaaccggtgactattttcaactaatcacaaagatattggtactctttaccttttattcggtgcctgagctggcatggtggggactgctcttagtcttctaatccgggccgaactgggccaacctggtacactactaggagatgatcagatttacaatgtaatcgtcactgcccatgcttttgtaatgatcttttttatggtgatgcctattataattggagggttcggaaactgattggtcccattaataattggagctcctgacatagcatttccccgaataaacaacatgagcttctgactcctccctccatcctttctactcttactcgcctcatctatggtagaagccggagcaggaactgggtgaacagtatacccacccctagccggcaacctggctcatgcaggagcatccgtagacctaactattttttcactacacctggcaggtgtctcctcaatcttgggtgctattaatttcattactactattattaatataaaacctcctgccatgtcccaatatcaaacacctctatttgtctgatcagtcttaatcactgctgtcttactacttctatcacttccagtcttagcagcgggaatcactatattattaacagatcgaaacctaaacaccacattctttgaccccgctgggggaggagatcctatcttataccaacacttattctgattctttggccatccagaagtttacattttaatcctacccggttttgggataatctcacatattgttacctattattcaggtaaaaaagaaccctttggctacatgggaatagtttgagccatgatatcaatcggcttcctgggctttatcgtatgagcccatcacatgtttactgtaggaatggatgtagacacacgagcatactttacatcagccactataattattgccattcctaccggggtgaaagtatttagttgactggctactcttcatggaggtaatattaaatggtcccctgctatattatgagccttaggctttattttcctatttaccgtaggaggcctaacgggaattgtactagcaaactcttcattagacattgttcttcacgacacatattacgtagtggcccactttcactatgtcttgtcaataggagcagtattcgctatcataggaggcttcgtccattgattccccctattctcaggatatacccttgacaacacttgagcaaagattcactttacgattatgtttgtaggagtcaatataacgttcttccctcagcacttcctaggcctgtccggaatgccacgacgttattctgactatccagatgcatatacaacttgaaatacgatttcctcaatgggctctttcatctcattaacagcagtcatgttaatagttttcatagtgtgagaagctttcgcatccaagcgagaagtggccatagtagaactaaccacaactaatcttgaatgattgcatggatgtcctcctccgtaccacacatttgaagagccaacttacgtactattaaaataagaaaggaaggaatcgaaccctctttaactggtttcaagccaatgccataaccattatgtctttctcaattaagaagtattagtaaaacaattacataactttgtcgaagttaaattataggcttgaatcctatatgcttcaatggcgtacccctttcaactaggtttccaagatgctacatcccccattatagaagaactcctacactttcacgaccacacactaataattgtatttttaatcagctctttagttctttatattatctcgttgatgctaacaaccaagctcacgcacacgagtacaatagatgctcaagaagtagaaaccatctgaaccatcctacctgctattatcctgattcttatcgccctaccctccttacgaattctctatataatggatgaaatcaacaacccctccctcacagtaaaaaccataggacatcaatgatattgaagttatgagtacactgattacgaagacttgaattttgactcttacataattcctacccaagagctaaaaccaggagaactccggctattagaagttgacaaccgagtagttttaccaatagaaatgaccattcgcatgttaatctcatcagaagatgtgttacactcatgagccgtcccatccctaggcctaaaaactgatgctatcccaggccgattaaatcaaacaactctaatagctacacgacctggtttatattatggccaatgctcagaaatctgtggctcaaaccatagcttcatacccattgttcttgaattagtcccactaacgtactttgaaaaatgatctgcatctatactgtaaattcattaagaagctaaataagcattaaccttttaagttaaagactgggagtttaaatctccccttaatgacatgccacaactagatacatccacctgatccatcactattatatcaataattataacactatttattgtattccaactaaaaatctcaaaatacttatatccatcaaacccagaacctaaatccataaccacactaaaacaacggaatccctgagaaaaaaaatgaacgaaaatctattcgcctctttcactaccccaacaataataggattacctattgttattttaattattatatttccaagcattttattcccttcacctaaccgactaattaataaccgtctagtttcactccaacaatgactagtacaactaacatcaaaacaaatactggctattcataatcataaaggacaaacctgagccctaatactaatgtccctaattctatttattgggtcaacaaacttattaggcctattaccccactcattcaccccaactacccaattatcaataaatttaggaatagctatcccgctatgagccggcactgtaattaccgggtttcgccacaagactaaagcatctctggcccactttctaccacaaggaacacctgtccccctaattcctatgcttgtagtcattgagactatcagcctctttatccaacctatagctctcgccgtacgacttacagccaacatcaccgcaggtcacttattaatacatctaattggaggggccgccctagccctgataaacattagcacctctattgccttaatcacctttaccattctcattttactaacaatccttgaatttgccgtagccctaatccaagcctatgtttttaccctgctagtaagcctatacttacatgataacacctaatgacccaccaaacccatgcataccacatagtcaaccctagcccatggccacttacaggagccctttcagccctcttaataacctcaggcctggctatatgattccactacaacttaacactgctgttaacccttggaataactaccaacttactaactatatatcaatgatgacgagacattatccgagaaagcacattccaaggccatcatacacctatcgttcaaaaaggccttcgatacggaataatcctctttatcatctcagaagtattctttttcgcaggcttcttctgggccttctaccactcaagcctagccccaacccccgagctaggaggatgctgaccaccaacaggcattattcccctgaaccccctggaagttccactacttaatacctccgtgcttctagcctccggagtatcaatcacctgagctcaccacagtttgatggagggaaatcgaaaacacatgcttcaagcactatttattacaatctctttaggggtctactttacactcctccaagcctccgaatactatgaaacatcattcacgatctcggacggagtatacggatctaccttcttcatggccacaggattccatgggctacatgtaattattggctctactttcctaattgtatgcttcttacgccaattaaaatatcactttacatcaaatcaccacttcggatttgaagccgccgcctgatattgacacttcgtagacgtagtttgactattcctatacgtttctatttattgatgaggatcctattcctttagtattaataagtacagttgacttccaatcaaccagtttcggtataacccgaaaaggaataataaatgtaatacttgccttacttaccaatacactcctgtccacactacttgtactcatcgcattctgattaccccaactaaacatctatgcagaaaaagcaagcccctatgagtgcggatttgatcctatagggtccgcccgcctacccttctccataaaattcttcctggtagccattacattcttgctatttgatctagaaattgcactactactcccccttccctgagcctcacaaacagacaaactaccaaccatactcactatagcccttctactaatctcattactagccgcaagcctagcctacgaatgaacccaaaaaggactagaatgaactgaatatgataattagtttaaaccaaaacaaatgatttcgactcattagattatagctcaccctataattatcaaatgtccatagtctacattaatattttcctggctttcatcatgtcgctcataggactactaatatatcgatcccacttaatgtcttccctcctatgtctagaaggcatgatattatccctattcattataatagccgtagccatcctaaacaaccatctcacactagccagcataacccccattatcctattagtatttgcagcttgtgaggcagcactaggtttatctctactagtaatagtatcaaatacatatggcactgactatgtacaaaacctaaacctcctacaatgctaaaaattattatccccactgccatactcataccaataacatgcctatcgaaacctaacataatctgaatcaactcaacaacctacagcctactaattagtcttattagcctctcctatctaaaccaactaggtggccatagtctaaatttttcactgttatttttctcagactcactctccgcacctttactagtactaacaacatgactcctaccgctaatactcatagccagccaatcacacctatcaaaagaaactcctagtcgaaaaaaactatacatcacaatactcactctcctgcagcttcttttgattataacatttaccgctacagaactaattatattttacattttatttgaagccacattaatccccaccttaatcatcattacccgatggggtgaccagacagagcgattaaacgccggcctatactttctattttacactctagtaggctcactaccccttttagtcgcactactgtatatccagaatacaacaggaactttaaatttcctgatcatccaatactgagccaagcccatctcaaccacctggtccaatattttcctctgactagcatgcatgatagcatttatagtaaaaatacctctatatggactccacctatgattgccaaaagcacatgttgaagctcccatcgctggttcaatagtacttgccgccgtattactaaaactagggggatacgggataatgcgtattacagtcctacttaaccccgcaacgaaccaaatggcatacccctttataatactatccctgtgaggaatggttataacaagctccatttgcctgcgccaaacagacctaaaatccctaatcgcatactcatccgtaagtcacatggccctagtaattgtagcagtactgatccaaacaccctgaagctatataggagctacagccttaataattgctcatggactgacctcatctatgctattctgccttgcaaactcaaactatgaacgagtacatagccgaacaataatcctagcccgggggctacagactatcctccccctaatagctgcctgatgactactagctagcctcgcaaacctagccctaccacccacaattaatctaatcggagagctatttgtagtaatagcctccttctcatgatcaaacataaccattatcctaatgggtactaatatcatcattacagccctatactccctctacatacttattataactcaacgaggcaaatacacacaccacattaaaaatatcaacccatcatttacacgagaaaacgccctaatagccctccacctactcccccttctcctcctatcacttaaccctaagattgtactaggccccatttactgtaaatatagtttaataaaaacattagattgtgaatctaataatggaagtgcaagtcttcttatttaccgaaaaagtatgcaagaactgctaattcatgcctccacgtataaaaacgtggctttttcaacttttataggatagaagtaatccattggtcttaggaaccaaaaaattggtgcaactccaaataaaagtaataaacctatttaccccactcatactaactgcaatatttattctactcctgcccatcattatatctaacacccaactgtataaaaacagcctatatccccactatgtaaaaaccacaatctcttacgccttcatcatcagcataatcccaactataatatttatctcctcaggacaagaagcaattatctcaaactgacactgactatcaatccaaactctcaagctatcactaagctttaaaatagattatttctcaaccatctttatccctgtagcgcttttcgtcacatggtccatcatagaattctcaatgtggtacatgcactcagacccatacatcaaccgattctttaaatatctcctcatattcctaatcactatgataattctagttaccgctaacaatctatttcaactattcatcggctgagagggagtaggaatcatatcttttctacttatcggatgatgatatggccgagcagatgcaaacactgccgccctacaagcaatcctctacaaccgcattggagacgtaggcttcatcatagccatagcatgatttctcaccaactcaaacgcatgggacttccaacaaatctttatcacccaacacgagaacctaaatattccattactagggcttctattagcagccacaggtaaatccgcccaattcggcctacatccgtgactgccatcagccatagaaggcccaactcctgtctccgccctactccactcaagtacaatagtcgtagcaggggtcttcttacttatccggttttacccgctcatagaacaaaacaaaactatacaaactctcaccctatgtttaggagctattacaaccttgttcacagctatttgtgctctcacacaaaatgatatcaaaaaagttgttgccttttcaacctcaagccaactgggcctaataattgtaaccattgggattaaccaaccttacctcgcatttctacacatttgcacacacgcattcttcaaagccatgctattcatatgttcaggatcaattatccacagtctgaacgacgaacaagacattcgaaaaataggcggattatacaaaccaatgcccttcaccactacctccctaatcattggaagcctcgcactcacaggtatacctttcctaacaggtttttattccaaagacctaatcatcgagacagccaacacgtcgtataccaacgcctgagccctactaattactctcattgccacatcccttacagctgcctacagtactcgaattatattctttgtgctactaggacaaccacgattcaataccttgaatctaatcaatgaaaataatacccacctcatcaactccattaaacgtctcttaatcggaagtatctttgcaggatatctaatttcttacaacatccccccaacaactatcccacaaataactataccctactatctaaaactaactgctcttgccgtgactatcgcaggcttcatcctagcattagaacttaatctcgcggctaaaaacttaaaatttatatacccttcaaacctctttaagttttccaacctcttagggtactttccaattgtaatacaccgcctcccatcaaaaatgagcctaactatgagccaaaagtccgcatcgatactattagacataatttgactagaaaatgtattacccaaatccatctccttattccaaataaaaatgtcaactactgtatctaatcagaaaggactagttaaactctactttttatctttcataatcaccctagccctcagcctaatcttacttaattcccacgagtaacttccataatcaccaacacaccaataagcaaagatcagccggtgacaaccactaatcaagttccataactatatagcgccgcaattcccatggcctcctcactaaagaaccctgagtcacctgtatcataaatcacccaatcacctgcaccattaaacttaaatacgacttctacctcatcttcctttaaaatataacaagcagttaataattctgctaacacccccgtaataaacattgctaatacagccttattagacgtccacgcctcaggataaggctcagtagccatagccgtagtatatccaaacactacgagtataccccctaaataaattaagaaaaccattaaacctaaaaatgatcccccaaaattcaacacaataccacaaccagtaccaccagccacaattaaaccaaacccaccataaattggagaaggctttgaagaaaaacttacaaagctcactacaaaaactgtacttaaaataaatacaatgtatgttatcattattctcacatggaatttaaccatgactaatgatatgaaaaaccatcgttgtatttcaactataagaacttaatgaccaacattcgaaaatcacacccccttatcaaaattattaatcactcattcatcgatctacccgccccatctaacatctcagcatgatgaaacttcggctcccttctaggagtctgcctaaccttacaaatcctcaccggcctctttttggccatacactacacatcagacacaataaccgccttttcatcagttacccacatctgtcgcgacgttaattatggctgaatcatccgatatttacacgccaacggagcttctatattctttatctgcctgtacatacatgtaggacggggaatatactacggctcctacaccttctcagagacatgaaacattggaatcatactattatttacagtcatagccacagcttttatgggatacgtcctaccatgaggccaaatgtccttctgaggagcaaccgtaatcactaacctcctgtcagcaattccatacatcgggactgaactagtagaatgaatctgaggggggttctcagtagacaaagccaccctaacacgattctttggcttccacttcattcttccattcattatctcagccttagcaggagtacacctcttattccttcatgaaacaggatctaacaacccctcaggaattacatccgattcagacaaaatcccattccacccatactatacaatcaaagacatcctaggtcttctagtactagttttaacactcatactactcgtcctattttcaccagacctgctaggagacccagacaactacatcccagccaaccctttaaatacccctccccatattaaacctgaatgatacttcctattcgcatacgcaattctccgatccatccctaacaaactagggggagtcctagccctagtactctccatcctagtactagcaatcattccaatcctccacacctccaaacaacgaggaataatgtttcgaccactaagccaatgtctattctgactcctagtagcggatctcctaaccctaacatgaatcggtggccaacctgtagaacatccgttcatcaccatcgggcaactagcctccatcctatatttctcaaccctcctaatcctaatacccatctcaggcattattgaaaaccgtctactcaaatgaagagtctttgtagtatataaaatactttggtcttgtaaaccaaaaaaggagaacatatgccctccctaagacttcaaggaagaagcaacagccccactatcagcacccaaagctgaaattctttcttaaactattccttggcaataccagaaagcaaccccataactttcataattcatatattgcatatacccatactgtgcttggccagtatgtccttatttcccacaaaaaaaccaagtaaaaacccccaaacaccacaacccaaaacacacaatgtaaaatcactctattaaccaccaactcaccccagggggtattatacacccatatacataagacatactatgtacatcgtgcattaattgctagtccccatgaatattaagcatgtacaggagtttatatatattacataagacatactatgtatatcgtgcattaattgctagtccccatgaatattaagcatgtacagtagtttatatatattacataagacatactatgtatatcgtgcattaattgctagtccccatgaatattaagcatgtacagtagtttatatatattacataagacataatagtgcttaatcgtgcattcaccttaattctaggacagtcttctatggacctcaactattccaaagagcttaatcacctggcctcgagaaaccagcaatccttgctcgaacgtgtacctcttctcgctccgggcccatttcaacgtgggggtttctataacggaactatacctggcatctggttcttacttcagggccataaaatccttgaaaccaatccttcagttctctcaaatgggacatctcgat
data/examples/genes/chimpanzee.txt ADDED
@@ -0,0 +1 @@
1
+ gtttatgtagcttacccccttaaagcaatacactgaaaatgtttcgacgggtttatatcaccccataaacaaacaggtttggtcctagcctttctattagctcttagtaagattacacatgcaagcatccgtcccgtgagtcaccctctaaatcaccatgatcaaaaggaacaagtatcaagcacacagcaatgcagctcaagacgcttagcctagccacacccccacgggagacagcagtgataaacctttagcaataaacgaaagtttaactaagccatactaacctcagggttggtcaatttcgtgctagccaccgcggtcacacgattaacccaagtcaatagaaaccggcgtaaagagtgttttagatcaccccccccccaataaagctaaaattcacctgagttgtaaaaaactccagctgatacaaaataaactacgaaagtggctttaacacatctgaacacacaatagctaagacccaaactgggattagataccccactatgcttagccctaaacttcaacagttaaattaacaaaactgctcgccagaacactacgagccacagcttaaaactcaaaggacctggcggtgcttcatatccctctagaggagcctgttctgtaatcgataaaccccgatcaacctcaccgcctcttgctcagcctatataccgccatcttcagcaaaccctgatgaaggttacaaagtaagcgcaagtacccacgtaaagacgttaggtcaaggtgtagcctatgaggcggcaagaaatgggctacattttctaccccagaaaattacgataacccttatgaaacctaagggtcgaaggtggatttagcagtaaactaagagtagagtgcttagttgaacagggccctgaagcgcgtacacaccgcccgtcaccctcctcaagtatacttcaaaggatatttaacttaaacccctacgcatttatatagaggagataagtcgtaacatggtaagtgtactggaaagtgcacttggacgaaccagagtgtagcttaacataaagcacccaacttacacttaggagatttcaactcaacttgaccactctgagccaaacctagccccaaaccccctccaccctactaccaaacaaccttaaccaaaccatttacccaaataaagtataggcgatagaaattgtaaatcggcgcaatagatatagtaccgcaagggaaagatgaaaaattacacccaagcataatacagcaaggactaacccctgtaccttttgcataatgaattaactagaaataactttgcaaagagaactaaagccaagatccccgaaaccagacgagctacctaagaacagctaaaagagcacacccgtctatgtagcaaaatagtgggaagatttataggtagaggcgacaaacctaccgagcctggtgatagctggttgtccaagatagaatcttagttcaactttaaatttacctacagaaccctctaaatccccctgtaaatttaactgttagtccaaagaggaacagctctttagacactaggaaaaaaccttatgaagagagtaaaaaatttaatgcccatagtaggcctaaaagcagccaccaattaagaaagcgttcaagctcaacacccacaacctcaaaaaatcccaagcatacaagcgaactccttacgctcaattggaccaatctattaccccatagaagagctaatgttagtataagtaacatgaaaacattctcctccgcataagcctactacagaccaaaatattaaactgacaattaacagcccaatatctacaatcaaccaacaagccgttattacccccactgttaacccaacacaggcatgcacacaaggaaaggttaaaaaaagtaaaaggaactcggcaaatcttaccccgcctgtttaccaaaaacatcacctctagcattaccagtattagaggcaccgcctgcccggtgacatatgtttaacggccgcggtaccctaaccgtgcaaaggtagcataatcacttgttccttaaatagggacttgtatgaatggctccacgagggtttagctgtctcttactttcaaccagtgaaattgacctacccgtgaagaggcgggcataacatagcaagacgagaagaccctatggagctttaattcattaatgcaaacaatacttaacaaacccacaggtcctaaactattaaacctgcattaaaaatttcggttggggcgacctcggagcacaacccaacctccgagcaacacatgctaagacctcaccagtcaaagcgaattattacatccaattgatccaattacttgaccaacggaacaagttaccctagggataacagcgcaatcctattccagagtccatatcaacaatagggtttacgacctcgatgttggatcaggacatcccgatggtgcagccgctattaaaggttcgtttgttcaacgattaaagtcctacgtgatctgagttcagaccggagtaatccaggtcggtttctatctgttctaaatttctccctgtacgaaaggacaagagaaatggggcctacttcacaaagcgcctcccccaataaatgatattatctcaatttaacaccacacctacacccactcaagaacagagtttgttaagatggcagagcccggtaatcgcataaaacttaaaactttacaatcagaggttcaattcctcttcttaacaacacacccatgactaacctcctactcctcattgtacctgtcctaatcgcaatagcattcctaatgctaaccgaacgaaaaatcctaggctacatacaactacgcaaaggccccaacattgtaggcccctacggactattacagcctttcgctgacgccataaaactcttcaccaaagaacccttaaaaccctccacttcaactattaccctctatattaccgccccaaccttagccctgaccatcgccctcttactatgaacccctctccccatgcccaaccccctagtcaatcttaacttaggcctcctatttattctagccacctctagcctagccgtttactcaatcctctgatcaggatgagcatcaaactcgaactacgccttaatcggtgcattacgagcagtagcccaaacaatctcatacgaagtcactctagccattattctactatcaacgctactaataagtggctccttcaatctctctacccttatcacaacacaagaacacctctgactaatcctgccaacatgacccttggccataatatgatttatctctacactagcagaaaccaaccggactcccttcgaccttactgaaggagaatctgaactagtctcaggcttcaacatcgaatatgccgcaggcccatttgccctattctttatagccgaatacataaacattattataataaacaccctcactgctacaatcttcctaggaacaacatacaatacgcactcccctgaactctacacgacatactttgtcaccaaggctctacttttaacctccctgttcctatgaattcgaacaacatatccccgactttgctacgaccaactcatacacctcctatgaaaaaacttcctaccactcaccctagcatcactcatgtgatatatttccatacccactacaatctccagcatcccccctcaaacctaagaaatatgtctgataaaagaattactttgatagagtaaataataggagtttaaatccccttatttctaggactatgagagtcgaacccatccctgagaatccaaaattctccgtgccacctatcacaccccatcctaaagtaaggtcagctaaataagctatcgggcccataccccgaaaatgttggttatacccttcccgtactaattaatcccctagcccaacccatcatctactctaccatcttcgcaggcacattcattacagtgctaagctcacactgatttttcacctgagtaggcctagaaataaatatactagcttttatcccagtcctaaccaaaaaaataagcccccgctccacagaagctgccatcaaatactttctcacacaagcaaccgcgtccatgattctcctaatagctatcctctccaacaacatactctccggacaatgaaccataaccaacactaccaatcaatactcatcattaataattataacagctatggcaataaaactaggtatagccccctttcacttctgagttccagaagttacccaaggcacccccctaatatccggcctactcctcctcacatgacaaaaactagcccccatctcaattatataccaaatatcctcatcactgaacgtaaaccttctcctcaccctttcaatcttgtccattatagcaggcagctgaggcggactaaaccaaacccaactacgcaaaatcctagcatactcctcaatcacccacataggctgaataatagcagttctaccatacaaccctaacataaccattcttaatttaactatttatatcatcctaactactaccacattcctgctactcaacttaaactccagcaccacaaccctactactatctcgcacctgaaacaagctaacatgactaactcctctaatcccatccaccctcctctccctaggaggcctacccccactaaccggcttcttgcccaaatgagttatcatcgaagaattcacaaaaaataatagcctcattatccccaccaccatagccatcatcactctccttaacctctatttctacctccgcctaatctactccacctcgatcacactacttcctatatccaataatgtaaaaataaaatgacaatttgaacatacaaaacctacccccttcctccctacactcatcacccttaccacactacttctacccatctcccctttcatactaatgatcttatagaaatttaggttaaacacagaccaagagccttcaaagctctcagtaagttacaatacttaatttctgcaacaactaaggactgcaaaaccccactctgcatcaactgaacgcaaatcagccactttaattaagctaagcccttactagattaatgggacttaaacccacaaacatttagttaacagctaaacaccctaatcagctggcttcaatctacttctcccgccgcaagaaaaaaaggcgggagaagccccggcaggtttgaagctgcttctttgaatttgcaattcaatatgaaaatcacctcagagctggtaaaaagaggcttaacccctgtctttagatttacagtccaatgcttcactcagccattttacccaccctactgatgttcaccgaccgctgactattctctacaaaccacaaagatattggaacactatacctactattcggcacatgagctggagttctgggcacagccctaagtctccttattcgagctgaattaggccaaccaggcaaccttctaggtaacgaccacatctataatgtcattgtcacagcccatgcgttcgtaataatctttttcatagtaatacctatcataatcggaggcttcggcaactggctagttcccttgataattggtgcccccgacatggcattcccccgtataaacaacataagcttctgactcctacccccttctctcctacttctacttgcatctgccatagtagaagccggcgccggaacaggttggacagtctaccctcccttagcaggaaactattcgcatcctggagcctccgtagacctaaccatcttctccttgcacctggcaggcgtctcctctatcctaggagccattaacttcatcacaacaatcattaatataaaacctcctgccataacccaataccaaacaccccttttcgtctgatccgtcctaattacagcagtcttacttctcctatccctcccagtcctagctgctggcatcaccatactattaacagatcgtaacctcaacactaccttcttcgacccagctgggggaggagaccctattctatatcaacacttattctgattttttggccaccccgaagtttacattcttatcctaccaggcttcggaataatttcccacattgtaacttattactcaggaaaaaaagaaccattcggatacataggcatggtttgagctataatatcaattggtttcctagggtttattgtgtgagcacaccatatatttacagtaggaatagacgtagacacacgagcctatttcacttccgctaccataatcattgctattcctaccggcgtcaaagtattcagctggctcgctacacttcacggaagcaatatgaaatgatctgccgcagtactctgagccctagggttcatctttctcttcaccgtgggtggcctaaccggtattgtactagcaaactcatcattagacatcgtactacacgacacatattacgtcgtagcccacttccactacgtcctatcaataggagctgtattcgccatcataggaggcttcattcactgattccccctattttcaggctataccctagaccaaacctatgccaaaatccaatttgccatcatattcattggcgtaaacctaaccttcttcccacaacacttccttggcctgtctggaatgccccgacgttactcggactaccctgatgcatacaccacatgaaatgtcctatcatccgtaggctcattcatctccctaacggcagtaatattaataattttcataatttgagaagcctttgcttcaaaacgaaaagtcctaatagtagaagagccctccgcaaacctggagtgactgtatggatgccccccaccctaccacacgttcgaagaacccgtgtacataaaatctagacaaaaaaggaaggaatcgaaccccctaaagctggtttcaagccaaccccatgacccccatgactttttcaaaaagatattagaaaaactatttcataactttgtcaaagttaaattacaggttaaaccccgtatatcttaatggcacatgcagcgcaagtaggtctacaagacgccacttcccctatcatagaagaacttattatctttcatgaccatgccctcataattatctttctcatctgcttcctagtcctgtacgcccttttcctaacactcacaacaaaactaactaatactagtatttcagacgcccaggaaatagaaaccgtctgaactatcctgcccgccatcatcctagtccttattgcccttccatctctacgtatcctttatataacagacgaggtcaacgacccctcctttactattaaatcaatcggccatcaatgatattgaacctacgaatacaccgactacggcggactaatcttcaactcctacatactccccccattatttctagaaccaggcgacctacgactccttgacgttgataaccgggtggtcctcccagttgaagcccccgttcgtataataattacatcacaagatgttctacactcatgagctgtccccacattaggcctaaaaacagacgcaattcccggacgcctaaaccaaaccactttcaccgccacacgaccaggagtatactatggccaatgctcagaaatctgtggagcaaaccacagttttatacccatcgtcctagagttaatccccctaaaaatctttgaaataggacccgtattcactctataacaccttctctacccctctccaaagctcactgtaaagctaacctagcattaaccttttaagttaaagattaagaggaccaacacctctttacagtgaaatgccccaactaaataccgccgtatgacccaccacaattacccctatactccttacactatttcttatcacccaactaaaaatattaaactcaaattaccatctacccccctcaccaaaacccataaaaataaaaaactacaataaaccctgagaaccaaaatgaacgaaaatctgttcgcttcattcgctgcccccacaatcctaggcctacccgccgcagtactgatcattctattcccccctctactggttcccacctctaaacatctcatcaacaaccgactaattaccacccaacaatgactaattcaactgacctcaaaacaaataataactatacacaacactaaaggacgaacctgatctctcatactagtatccttaattatttttattgccacaactaatcttctcggacttctacctcactcattcacaccaaccacccaactatctataaacctagccatggctatccccctatgagcaggcacagtagtcataggctttcgctttaagactaaaaatgccctagcccacttcttaccgcaaggcacacctacaccccttatccccatactaattatcatcgaaactatcagcctattcattcaaccaatagccttagccgtacgtctaaccgctaacattactgcaggccacctactcatgcacctaattggaagcgccacactagcattatcaactattagtttaccctccacactcattatcttcacaattctaatcctactgactgttctagaaatcgccgttgccttaatccaagcctacgtttttacacttctagtgagcctctacctgcacgacaacacataatggcccaccaatcacatgcttatcatatagtaaaacccagcccatggcccctaacaggggccctctcagccctcctaataacctctggcctagccatatgattccacttctactccacaacactgctcacactaggtttactaactaacacattaaccatatatcaatgatgacgcgatgttatacgagagagcacataccaaggccaccacacaccacccgtccaaaaaggtctccgatacggaataattcttttcattacctcagaagtttttttctttgcaggatttttttgagctttctaccactccagcctagcccctaccccccagctaggaggacactgacccccaacaggtattaccccactaaatcccctagaagttccactcctaaacacatctgtattactcgcatcaggagtatcaattacttgagcccatcacagcttaatagaaaataaccgaaaccaaataattcaagcactactcattacaattttactaggtctctatttcaccctcctacaagcctcagaatacttcgaatccccttttaccatttccgatggcatctacggctcaacattctttgtagccacaggcttccacgggctccacgtcattattggatcaactttcctcactatctgcctcatccgccaactaatatttcacttcacatccaaacatcacttcggctttgaagccgccgcctgatactggcacttcgtagatgtagtctgactatttctatatgtctccatctactgatgaggatcttactcttttagtataagcagtaccgttaacttccaattaactagttttgacaacattcaaaaaagagtaataaacttcgtcctaattttaataaccaatacccttttagccctactactaataattattacattctgattaccacaactcaacagctacatagaaaaatctaacccttacgaatgtggcttcgaccctatatcccccgctcgcgtccccttctccataaaatttttcctagtagccatcaccttcctattatttgacctagaaattgccctcctattacccttaccatgagccctacaaacagccaacctaccactaatagtcatatcatccctcttattaatcactatcctagccctaagcctcgcctacgaatgattacaaaaggggttagactgagccgaattggtacatagtttaaacaaaacgaatgatttcgactcattagattatgataatcatatttaccaaatgcctcttatttatataaatattatactagcatttaccatctcacttctaggaatactagtataccgctcacacctaatatcttctctactatgcctagaaggaataatactatcattattcatcataaccaccctcataaccctcaatacccactccctcttagccaatattgtacccatcaccatactagtctttgctgcctgcgaggcagcagtaggtctagcactattagtttcaatctctaacacgtatggcctagactacgtacataatctaaacctactccaatgctaaaactaattatcccaacaattatattactaccactaacatgattctctaaaaaacgtataatttgaatcaacacaaccactcacagcctaattatcagcaccattcccctactattttttaaccaaatcaacaacaacctattcagctgttccctatctttctcctccgaccccctaacaacccccctcctaatactaactgcctgacttctacccctcacaatcatagcaagtcagcgccacctatccaacgaaccaccatcacgaaaaaaactctacctctccatactaatctccctccaaatctccttaattataacattctcagccacagagctaattatattttacatcttcttcgaaaccacactcatccccaccctagccatcatcacccgatggggtaaccaaccagaacgcctgaacgcaggtacatacttcctattctataccctagtaggctccctccccctactcatcgcgctaatctacacccacaacaccctaggctcactaaatatcctattgctcaccctcacagcccaagaactatcaaacacctgagccaacaacttaatatgactagcgtacacgatagctttcatggtaaaaataccactttacggactccacctatgactccctaaagcccatgtcgaagcccctattgccggatcaatggtacttgctgcagtactcttaaaattaggcggctatggcataatacgcctcacactcattctcaaccccctaacaaaacatatagcctatcccttcctcatgttatccttatgaggcataatcataacaagctccatctgcctgcgacaaacagacctaaaatcgctcattgcatactcttcagtcagccacatagccctcgtagtaacagccattctcatccaaaccccctgaagcttcaccggcgcagtcattcttataatcgcccacggacttacatcctcattactattctgcctagcaaactcaaattacgaacgcacccacagtcgcatcataattctctcccaaggacttcaaactctactcccactaatagccttttgatgactcctagcaagcctcgccaacctcgccctaccccccaccattaatctcctaggagaactctccgtgctagtaacctcattctcctgatcaaatactaccctcctactcacaggattcaacatactaattacagccctgtactccctctacatgtttaccacaacacaatgaggctcactcacccaccacattaataacataaaaccctcattcacacgagaaaacactctcatatttatacacctatcccccatcctcctcctatccctcaatcctgatattatcactggattcacctcctgtaaatatagtttaaccaaaacatcagattgtgaatctgacaacagaggctcacgaccccttatttaccgagaaagcttataagaactgctaattcatatccccatgcctaacaacatggctttctcaacttttaaaggataacagccatccgttggtcttaggccccaaaaattttggtgcaactccaaataaaagtaataaccatgtatactaccataaccaccttaaccctaactcccttaattctccccatcctcaccaccctcattaaccctaacaaaaaaaactcatatccccattatgtgaaatccattatcgcgtccacctttatcattagccttttccccacaacaatattcatatgcctagaccaagaagctattatctcaaactggcactgagcaacaacccaaacaacccagctctccctaagctttaaactagactacttttccataacatttatccccgtagcactgttcgttacatgagccatcatagaattctcactatgatacataaactcagacccaaacatcaaccaattcttcaaatatttacttatcttcctaattaccatactaatcttagtcaccgctaataacctattccaactcttcattggctgagaaggagtaggaattatatcctttctactcattagctgatggtacgcccgaacagatgccaacacagcagccatccaagcaatcctatataaccgcatcggtgacattggttttatcctagccctagcatgattcctcctacactccaactcatgagacccccaacaaatagtcctcctaagtactaatccaagccttactccactactaggcttcctcctagcagcagcaggcaaatcagcccaattaggccttcacccctgactcccctcagccatagaaggccctacccccgtttcagccctactccactcaagcaccatagtcgtagcaggagtcttcctactcatccgcttccaccccctagcagaaaataacccactaatccaaactctcacgctatgcctaggcgctatcaccaccctattcgcagcaatctgcgcccttacacaaaatgacatcaaaaaaatcgtagccttctccacttcaagtcaattaggactcataatagtcacaatcggtatcaaccaaccacacctagcattcctgcacatctgcacccatgcttttttcaaagccatactatttatatgctccggatccattatccacaacctcaacaatgaacaagacattcgaaaaataggaggactactcaaaaccatacccctcacctcaacctccctcatcattggcagcctagcattagcaggaatacctttcctcacaggtttctactccaaagacctcatcatcgaaactgcaaacatatcatacataaacgcctgagccctatctattactctcatcgccacctccctaacaagcgcctacagcacccgaataattctcctcaccttaataggtcaacctcgcttcccaaccctcactaacattaacgaaaacaaccccactctattaaatcccattaaacgcctaacgatcggaagcttatttgcaggatttttcattaccaacaacattctccccatatctacttcccaaatgacaattcccctttacttgaaactcacagccctaagcgttactttcctaggacttctaacagccctagacctcaattacctaaccaacaaactcaaaataaaatccccaccatatacattttacttctctaatatgctcggattctatcccaacattatacaccgctcaatcccctatctaggccttctcacaagccaaaacctgcccctactccttctagacctgacctgactagaaaaactactacccaaaacaatttcacagtaccaagtctccgcttccattaccacctcaacccaaaaaggtataatcaaactttatttcctctcttttctcttccctctcatcttaaccttactcctaatcatataacctattcccccgagcaatctcaattacaatgtatacaccaacaaataatgtccaaccagtaactactaccaaccaacgcccatagtcatacaaagcccccgcaccaataggatcctcccgaattagccccggcccctccccttcataaattattcaacttcccacgctattaaaatttactacaaccactaccccatcatactcttttacccacaacactaatcctacctccattgccagtcccactaaaacactaaccaaaacctcaacccctgacccccatgcctcagggtactcctcaatagccatcgccgtagtatacccaaaaacaaccattattccccccaaataaattaaaaaaaccattaaacctatataacctcccccataattcaaaatgatagtacacccaactacaccactaacaatcaatactaagcccccataaataggagaaggcttagaagaaaaccccacaaaccctattactaaactcacactcaataaaaataaaacatatgtcattattctcgcacggactacaaccacgaccaatgatatgaaaaaccatcgttgtatttcaactacaagaacaccaatgaccccaacacgcaaaatcaacccactaataaaattaattaatcactcatttatcgacctccccaccccatccaatatttccacatgatgaaacttcggctcacttctcggcgcctgcctaatccttcaaatcaccacaggactattcctagctatacactactcaccagacgcctcaaccgccttctcatcgatcgcccacattacccgagacgtaaactatggttgaatcatccgctaccttcacgctaacggcgcctcaatacttttcatctgcctcttcctacacgtcggtcgaggcctatattacggctcatttctctacctagaaacctgaaacattggcatcatcctcttgctcacaaccatagcaacagcctttatgggctatgtcctcccatgaggccaaatatccttctgaggggccacagtaattacaaacctactgtccgccatcccatacatcggaacagacctcgtccaatgagtctgaggaggctactcagtagacagccctacccttacacgattcttcaccctccactttatcctacccttcattatcacagccctaacaacacttcatctcctattcttacacgaaacaggatcaaataaccccctaggaatcacctcccactccgacaaaattaccttccacccctactacacaaccaaagatatccttggtttattccttttcctcctcgccctaatagtattaacactattttcaccagacctcctaggcgatccagacaattacaccctagccaaccccctaatcaccccaccccacattaagcccgagtggtattttctatttgcctacacaattctccgatccgtccccaacaaactaggaggtgttctcgccctactactatctatcctcatcctagcagtaatccctatcctccacacatccaaacaacaaagcataatatttcgcccactaagccaactgctttactgactcctagccacagacctccttatcctaacctgaatcggaggacaaccagtaagctaccccttcatcaccatcgggcaagtagcatccgtattgtacttcacaacaatcctaatcctaataccaattatctccctaatcgaaaacaaaatactcgaatgagcctgcccttgtagtataagctaatacaccggtcttgtaaaccggaaacgaaaactttattccaaggacaaatcagagaaaaagtctttaactccaccatcagcacccaaagctaagattctaatttaaactattctctgttctttcatggggaagcaaatttaagtgccacccaagtattggctcattcactataaccgctatgtatttcgtacattactgccagccaccatgaatattacatagtactataatcatttaaccacctataacacataaaaacctacatccacattaaaaccccccccccatgcatataagcacgaacaataatcgacctccaactgtcgaacataaacacccccccaaagacactccccccccaccccgataccaacaaacctgacagtccttaacagtacatagcacatacaattatataccgtacatagcacattacagtcaaatccatcctcgcccccacggatgccccccctcagataggaatcccttggccaccatcctccgtgaaatcaatatcccgcacaagagtgtactctcctcgctccgggcccataacacttgggggtagctaaactgaactgtatccgacatctggttcctacctcagggccatgaagttcaaaggactcccacacgttccccttaaataaggcattcacgatggatcacaggtctatcaccctattaaccactcacgggagcgctccatgcatttggtattttcgtctggggggtatgcacgcgatagcattgcgaaacgctggccccggagcaccctatgtcgcagtatctgtctttggttcctgccccattacgttatttatcgcacctacgttcaatattattacctagcatgatttactaaagcgtgttaattaattaatgcttgtaggacataacaataacagcaaaataccacgtaactgctttccacaccaacatcataacaaaaaatttccgccaaaccccccctcccccactcctggctacagcactcaaattcatctctgccaaaccccaaaaacaaagaacccagataccagcctaaccagacctcaaatttcatcttttggcggtatgcatttttaacagtcacccctcaactaacatgtcctcccccctcaactcccattccactagccccaacaacataaccccctgcccaccccactcagcacatataccgctgctaaccctataccctaagccaaccaaaccccaaagatatccccacaca
data/examples/genes/finWhale.txt ADDED
@@ -0,0 +1 @@
1
+ gttaattactaatcagcccatgatcataacataactgaggtttcatacatttggtatttttttattttttttggggggcttgcacggactcccctatgaccctaaagggtctcgtcgcagtcagataaattgtagctgggcctggatgtatttgttatttgactagcacaaccaacatgtgcagttaaattaatggttacaggacatagtactccactattccccccgggctcaaaaaactgtatgtcttagaggaccaaacccccctccttccatacaatactaaccctctgcttagatattcaccacccccctagacaggctcgtccctagatttaaaagccattttatttataaatcaatactaaatctgacacaagcccaataatgaaaatacatgaacgccatccctatccaatacgttgatgtagcttaaacacttacaaagcaagacactgaaaatgtctagatgggtctagccaaccccattgacattaaaggtttggtcccagcctttctattagttcttaacagacttacacatgcaagtatccacatcccagtgagaacgccctctaaatcataaagattaaaaggagcgggtatcaagcacgctagcactagcagctcacaacgcctcgcttagccacgcccccacgggacacagcagtgataaaaattaagctataaacgaaagttcgactaagtcatgttaatttaagggttggtaaacttcgtgccagccaccgcggtcatacgatcgacccaaattaatagaagcacggcgtaaagagtgttaaggagccacatgaaataaagtcaaaccttaattaagctgtaaaaagccctaattaaaattaagccaaactacgaaagtgactttaatataatctgatcacacgacagctaagatccaaactgggattagataccccactatgcttagtcgtaaaccccaatagtcacaaaacaagactattcgccagagtactactagcaacagcctaaaactcaaaggacttggcggtgcctcatacccatctagaggagcctgttctgtaaccgataaaccccgatcaacctcaccaacccttgctacttcagtctatataccgccatcttcagcaaaccctaaagggagaaaagtaagcataaccatcctacataaaaacgttaggtcaaggtgtaacccatgggttgggaagtaatgggctacattttctaagctaagaacatcccctatactcacacgaaagtttttatgaaacttaaaaactaaaggaggatttagtagtaaatcaagagcagagtgcttgattgaataaggccatgagggcacgcacacaccgcccgtcaccctcctcaagtaccccagctataaaccccagttcgttaactcaggccaagcaattatacgagaggagacaagtcgtaacaaggtaagcataccggaaggtgtgcttggacaaaacaagatatagcttaaacaaagcatgtagtttacacctagaagattccacagcccgtgtatatcttgaactagccctagcccacaccctccccacctctactaccacaaatcaatcaaataaaacatttaccatcccttcaaagtataggagatagaaatttaaatatcagtggcgctatagagatagtaccgtaaggaaagatgaaagaaaaacctaaaagtaataaaaagcaaagcttaccacttgtaccttttgcataatgacttaactagtaataaattagcaaagagaccttaagttaaattacccgaaaccagacgagctacttatgagcagcacctagaacgaactcatctatgtggcaaaatagtgagaagacttataagtagaggtgaaaagcctaacgagcctggtgatagctggttgtccctgaaaagaatctcagttcaacattaaataatactaaaagcccatgccaagccttaacgtatatttaactgttaatctaaaaaggtacagctttttagaaatgggtacaaccttgactagagagtaaaatcaaacataaacatagttggcctaaaagcagccatcaattaagaaagcgttcaagctcgacaacaaaataatgttttaattccaacattaagtaaatcaactcctagcctgactattggactaatctatacaaatatagaagcaatactgttaatatgagtaacaagaaatttttctcctagcacaagcttacaccagtaactgataatatactgataattaacagcaaataaataaaacccaacactaaattatttattaaaatactgttaacccaacacaggcgtgcattaaggaaagattaaaaaaagtaaaaggaactcggcaaacacaaaccccgcctgtttaccaaaaacatcacctctagcataaccagtattagagcactgcctgcccggtgactaatcgttaaacggccgcggtatcctgaccgtgcaaaggtagcataatcacttgttctctaattagggacttgtatgaatggccacacgagggttttactgtctcttacttttaatcagtgaaattgacctctccgtgaagaggcggagataacaaaataagacgagaagaccctatggagcttcaattaatcaacccaaaaaccataaccttaaaccaccaagggataacaaaaccttatatgggctgacaatttcggttggggtgacctcggagtacaaaaaaccctccgagtgattaaaacttaggcccactagccaaagtacaatatcacttattgatccaatcctttgatcaacggaacaagttaccctagggataacagcgcaatcctattctagagtccatatcgacaatagggtttacgacctcgatgttggatcaggacatcctaatggtgcagctgctattaagggttcgtttgttcaacgattaaagtcctacgtgatctgagttcagaccggagtaatccaggtcggtttctatctattacgcatttctcccagtacgaaaggacaagagaaataaggccaacttcaaacaagcgccttcaaacaattaatgacctagtctcaacttaataattaagcgcaaacaaacctgcccaagaccagggccttgttgaggtggcagagttcggtaattgcataaaacttaaacttttacacccagaggttcaaatcctctccccaacaaaatgtttataattaacattctaacactcattctccccatcctcctagccgtagcattcctaacgctagtagaacgcaaaattctaggctatatgcagttccgaaaggggccaaacatcgtaggcccacatggcttactccaaccctttgccgatgcaattaaattattcactaaagaacccctacggccagctacatcctcaactactatgtttatcattgcaccagtactagccctaaccctggccctcactatatgaagccccctacccataccataccccctcattaacataaacctaggagtattattcatattagcaatatccagcctagccgtctactccatcctatgatcaggctgagcctccaactcaaaatacgcactaattggagccctacgagcagtagcacaaacaatctcatatgaggtaacactagccattatcctcctatcagtactcctaataaacggctcctacaccttatcaacattagccacaacacaagaacaactatgattactattcccatcatgacccttagccataatgtgattcatctccaccctagcagaaactaatcgagctccttttgatctaacagagggagaatcagaactcgtatcaggcttcaacgtagaatatgcagcaggccctttcgccctattcttcctggcagaatacgccaacatcattataatgaatatactcacagccattttattcctaggaacattccacaaccctcataacccagaattgtacacagcaaaccttattatcaagacactactactcacaatatccttcctatgaattcgagcatcctacccccgattccgatatgaccaactaatacacctactctgaaaaaatttccttcccttaacactagccctttgcatatgacatatctcattaccaatcataactgcaagtatcccccctcaaacataagaaatatgtctgataaaagagttactttgatagagtaaataatagaggcccaaatcctcttatttctagaataataggaatcgaacctacccttaagaattcaaagttcttcgtgctaccatattacactacaatctacagtaaggtcagctaaacaagctatcgggcccataccccgaaaatgttggttcatatccttcccatactaataaacccattaatccttattatcctcctgacaacccttatcctaggtacaataatggtagtcaccagctctcactgactattagcctgaattggcttcgaaatgaacataatagccttcatccctatcataataaaaaatcctactccccgggccacagaagcttctaccaagtacctcctaacacaagccactgcttccgcactcctcataatagcagtcatcattaacttaatgcactcaggccaatgaactattacaaaactatttaacccaacagcatccacactcataacagtagccctagccatcaaactgggattagcccccttccacttttgagttccagaagtaacacaaggtatccccctaaccacaggcctaatcctattaacatgacaaaaactagctcccttatcaatcctataccaaatttcaccatcaattaacctacacctaatattaatcatatccttactttccatcttaataggaggctgaggtggactaaaccaaacacaacttcgaaaaatcatagcctactcatcaattgcccacataggatgaataacggccattctactatataatccaaccctaacattactaaatctactaatctacatcacaataaccttcaccatatttatattatttatccaaaactcaactaccactacattgtcactgtctcaaacctgaaataaaatacccgtcatcacaacccttaccatactcactttactctcgataggaggactcccaccactatcggggtttatacccaaatgaataattattcaagaactaacaaaaaatgatatactcattgtaccaacattcatagccattacagcattactcaacctatacttttatatacgtcttacttactccacagcactaacactatttccctccacaaataatataaaaataaaatgacaattcaactccacaaaacgaactcctctcctaccaacagcaatcgtaatttccactatgctactacccctcacaccaatactctcaatcctactataggagtttaggttaaacccagaccaagagccttcaaagccctaagcaagtataatttacttaactcctgcccaataaggactgcaagactatatcttacatcaattgaatgcaagtcaaacgctttaattaagctaaatcctcactagattggagggatacatctcccacgaatttttagttaacagctaaataccctaatcaactggcttcaatctacttctcccgccgcgagaaaaaaaaggcgggagaagtcccggcaggatttgaagctgcttccttgaatttgcaattcaaaatgatcattcaccacaggacttggtaaaaagaggactcaacctctgtctttagatttacagtctaatacctactcggccattttacctatgttcataaaccgctgactattctcaaccaaccacaaagacatcggcaccctatacttattattcggtgcttgagcaggaatagtaggcactggcctaagcttattaatccgcgctgagctaggtcaacctggcacactaatcggagatgaccaagtctacaacgtattagtaacagcccatgccttcgtgataattttcttcatggttatacctatcataattggcggattcggaaactgactagtcccactaataattggagcacctgacatagctttccctcgtataaataatataagcttctgactactccctccttctttcttactgttaatagcatcctcaataatcgaagccggtgcaggcacaggctgaactgtatatccccccttagccggaaatttagcacatgcaggagcctcagttgaccttaccatcttctccctacacttagccggcgtatcctcaatcctcggagccatcaactttatcacaaccattatcaacataaaaccacccgccataacccagtatcaaactccccttttcgtatgatcagtcctagtcacagcagtactactcctattatcactacctgttttagcagccggaattacaatgctacttactgaccgaaacctaaatacaactttcttcgaccctgcaggtggaggagacccaatcctgtaccaacacctattctgattctttggccaccctgaggtatatatcctaattcttcctgggttcggaataatttcacacattgtgacttattactcaggaaaaaaagaaccctttggctacataggaatagtttgagctatggtgtccattgggtttttaggctttatcgtatgagcccatcatatgtttacagtaggtatagacgttgatacacgagcatacttcacatccgccactataattatcgctattcccacaggagtaaaagtattcagttgattagcaacactacacgggggtaacattaaatgatctcctgccctaatatgagctctaggattcatcttccttttcacagtaggcggtctaactggtatcgtcctagccaactcatcattagacattgtcctacacgatacttactatgtagtcgctcacttccactatgtcctatcaataggggcagtcttcgccattataggaggctttgtccactgatttccactattctcagggtatacacttaacacaacatgagcaaaaattcacttcataatcatgttcgtaggtgtaaacctaacattctttccacaacacttcttaggcctatccggcatgcctcgacgatattccgattacccagacgcctacacaacatgaaatactatttcatctataggctcatttatctcactgacagcagttatactaataatcttcattatctgagaagcatttacatccaaacgagaggtactggcagtagacctcacctctaccaaccttgaatgactaaatgggtgtcctccaccataccatacattcgaagaaccagcattcgtcaacccaaagtgatcaagaaaggaaggaatcgaaccctctcccattggtttcaagccaacatcataattactatgtctttctttataaacgagatattagtaaaaccttatataactttgtcaaagttaagttacaagtgaaaatcctgtatatctccatggcatatccattccaactaggtttccaagatgcagcatcacccatcatagaagagctcctacactttcacgatcatacactaataatcgtttttctaattagctctttagttctctacattattaccctaatgcttacaaccaaattaacacatactagtacaatagacgcccaagaagtagaaactgtctgaactatcctcccagccattatcttaattttaattgccttgccttcattacggatcctttacataatagacgaagtcaataacccctccctcactgtaaaaacaataggtcaccaatgatattgaagctatgagtataccgactacgaagacctaagcttcgactcctatataatcccaacatcagacctaaagccaggagaactacgattattagaagtagataaccgagttgtcttacctatagaaataacaatccgaatattagtctcatcagaagacgtactccactcatgggccgtaccctccttgggcctaaaaacagatgcaatcccaggacgcctaaaccaaacaaccttaatatcaacacgaccaggcctattttatggacaatgctcagagatctgcggctcaaaccacagtttcataccaattgtcctagaactagtacccctagaagtctttgaaaaatgatctgtatcaatactataacttcattaagaagctaaattagcattaaccttttaagttaaagattgagagtctataactctccttaatgatatgccacaattagatacatcaatatgactccttactattctatcaatactcttaaccctctttgtattattccaattaaaaatctcaaagcactcctattcccctaaccccaaactagcacataccaaaacacaaaaacaacaagctccttgaaacaccacatgaacgaaaatttatttgccccttttataatcccagttatgctaggtatccctattaccactctaatcattatcctcccatctatattattccctgcaccaaatcgactaatcaacaaccgcacgatcgccatccaacaatgattaaccaaactcacatcaaaacaactaataaacgtacacagtcctaaaggacaaacttgatctctaatgctcatctcactattcctatttattgcctctaccaatctccttggaatattacctcactcatttacacccaccacacaactctcaataaacgtaggaatggctatccccttatgagctggcaccgttaccacaggcttccgcaacaaaacaaaaatatccttagcacatctactaccacagggcacacccacttttcttattcccatattagtaattattgagactatcagtctattcattcaaccggtagcatgagctgtacggctaactgccaacatcacagcaggccacttattaatgcatctaattggagaaacaaccctcgcactaataaatattaatctattttcagcctttatcactttcacaatccttgctctattaactatccttgaatttgctgtcgccctaattcaagcttacgtatttacccttctagtaagcctataccttcatgacaacacataatgacccaccaaacccactcataccacatagtaaaccccagcccttgacccctcaccggagctctatcagcccttctaataacatcaggcctaattatatgatttcacttcaactcaatactcctactaactctaggcttgtcaacaaatattttaacaatataccaatgatggcgagatatcatccgagaaagcaccttccaaggccatcatacaccaaccgtccaaaagggcttacgatacggaataattctatttatcgtctcagaagtcctatttttcacaggcttcttctgagccttctaccactcaagccttgcccctactccagaactaggcggatgttgaccaccaacaggcatccgccctttaaatcccttagaagttccccttctcaacacctccgtattactagcctctggcgtatctattacctgagcccaccatagcttgatagaaggaaaccgcaaacacatacttcaagcactcttcatcacaattgcactaggcctctacttcaccttactacaagcatcagagtactacgaagcccctttcacaatctcagacggaatctacggctccaccttctttgtagccacaggctttcatgggttacatgtaatcattggatctactttccttatcgtctgtttcctacgtcaagtaaaattccacttcacatcaaaccaccactttggctttgaacgtgccgcttgatactgacatttcgtagacgtcgtatgactatttctttatgtatctatctattgatgaggttcctagtccttttagtattaacaagtacaactgacttccaatcagttagtttcggtgtaccccgaaaaagaacaataaaccttctactaacactactaacaaatacaacactagccctactactcgtattcatcgccttctgacttccacaactaaacgtatacgcagaaaaaacaagcccatatgaatgcggatttgaccccataggatcagcccgcctacccttctccataaaattcttcttggtggccattactttccttctctttgacttagaaatcgctctcttactcccccttccttgagcaattcagtcaaacaacctaaacacaatactcacaatagccttattcttaatctccctactagcagccagcctagcttatgaatgaactcaagaaggcctagaatgagctgaatatggtatttagtttaagataaaacaagtgatttcgacccactagactgtgatcaaattcacaattaccaaatgaccttaatccatataaacattctcatagccttcagcatgtcccttataggcctattaatatatcgatcccacctaatatccgcattactctgcctagaaggtataatactatcacttttcgtcctagcagcccttacaatcctaagctcacacttcactttagctaacatgatgcctattatcctcctagttttcgcagcttgtgaggcagccatcggactagccttgctagttatagtctctaacacatatggtaccgattacgtacaaaacctcaaccttctccaatgctaaaatttattattcctacaatcatactaatacccctaacctgattatcaaaaaataacctaatctgaattaactccacagcccacagtctattaattagcttctcaagccttctcctcctcaatcaactcaacgacaacagccttaactactcactaatattcttctccgaccccctttctaccccactcctgatcctaacaatatgactccttcccttaatactaatagcaagtcaatcccatctcatcaaagaaccaccagtccgaaaaaaactctacattacgatactaatcacactacaagccctcctaattataacatttactgccactgaattaatcctattttatatcatatttgaagccacactaatccctacccttatcattatcactcgctggggcaaccaaacagaacgactcaatgccggactatacttcttattctatacactagttggatctctcccactactagtagcactagtatatttacaaaatacaacaggatccctaaactttctactcctacaacactgagctcaaccattatctacgtcctgatccaacatcttcatatgactagcctgcataatagccttcctagtaaaaatacctctctatggactatacctttgactgcccaaagcacacgtagaagcccccattgcaggctccatagtccttgcagccgtactactaaaacttggaggctatggcatactacgaattacatccatactcaatcccttaacagaacacatagcatacccatttcttatactctctctttgaggaataatcataaccagctctatctgtttacgtcaaacagacctaaaatcactaattgcatattcctcagttagtcacatagcactcgtcatcgcagctatcctcatccaaaccccctgaagctatataggggccactgccctaataattgcccacggcctcacatcctccatactattctgtttggcaaactcgaactacgaacgcattcatagccgaaccataattctgcccggaggcctacaagtctttctaccactaatagccagttgatgactattagcaagcttaacaaatcttgcactacccccaaccatcaacctaatcggagaactactcgtagtcatgtcggtcttctcatgatcaaatcccactattctcctaataggaacaaatattgtaattactgctctctactctctatatatactaatcataacacaacgtggcaaacacacacaccacatcaataatatcaccccttccttcacacgagagcatgccttaatagccctacacattattcccctcttgctcctatcactaaaccctaaaatcatcttaggccctctctactgtaagtatagtttaaaaaagacgctagtttgtgaaactaacaatagaagatcaaaacttcttacttaccgaaaaagtactgcaagaactgctaattcatgctcccacacctaacagctgtggctttttcaaacttttacaggatagtagttatccattggtcttaggagccaaaaaattggtgcaactccaaataaaagtaataaacctatttacctctttcaccctacttacactactaattctgaccacccccattataatatcacatacaggttcccatgtaaacaacaaatatcaatcatatgtaaaaaacattgtcttctgcgccttcatcactagtctagttcccgcaatagtatatcttcacacaaaccaagaaacactcatctcaaactgacactgaatcacaatccaaaccctcaaactaacacttagctttaaaatagattacttttcacttatatttataccagtagcactattcattacatgatccatcatagaattctcaatatgatatatgcactccgacccctacatcaaccaattttttaaatacttactcctcttcctcatcaccatactaatccttgttacagctaacaatctcttccaacttttcatcggatgagaaggagtaggaattatatccttcttactaattggctgatgattcggacgaacagatgcaaatacagccgccctccaagcaatcctatacaatcgtatcggagacattggactccttgcatcaatagcatgatttctctctaatataaacacatgagacctagaacaaatctttatactcaaccaaaaccccttaaatttccccctcataggactcgtactagccgcagcaggaaaatcggctcaattcggactccacccttgactcccatcagcaatagaaggtcctaccccagtctcagccctactccactcaagcacaatagttgtagcaggaatcttcttgcttgtccgcttctacccattaatagaaaataacaagctaatccaaacagtaaccctctgcttaggcgctatcacaactctatttacagccatctgtgccctcacccaaaacgacatcaaaaaaattattgctttctccacctccagccagctaggcctaataatagtaacaatcggccttaaccaaccttacctagcattcctacacatttgcacacacgccttctttaaagctatactattcctatgttctggctccatcatccataacctaaacaacgaacaagatatccgaaaaataggagggctatttaaggccctcccattcaccacaaccgcccttatcatcggatgtcttgcactaacaggaatgccattcctgaccggattctactccaaagatcccattattgaagccgccacttcgtcttataccaacgcctgagccctattactgaccttaatcgccacctcccttacggccgtctatagcacccgcatcattttctttgcactactaggacaaccccgcttccctccctccacaaccattaacgaaaataatccactgttaatcaaccctatcaaacgactactcgtcggaagtatcttcgctggcttcatcctatccaacagtattcccccaataactacacctttaataaccatacccctgcacttaaaattaaccgcccttgcaataacaaccctaggcttcatcatcgcattcgaaattaaccttgacacacaaaatctaaagcacaagcacccatcaaactcctttaaattctccaccttactaggttatttccccacaatcatacatcgcctaccccctcaccttgacctgttaataagccaaaaactagcaacttccctactagatctaacttgactagaaactattttaccaaaaaccacagcccttatccaactaaaagcctctacactaacctctaaccaacaaggcctcatcaaactctacttcttatctttcctcatcaccatcaccctcagcataatcttatttaactaccccgagtaatctccataataattacaacactaataaataaagaccaacccgtaacaatcaccaaccaaacaccataactatataatgccgcaatccctgtagcctcctcactaaaaaccccagaacccccagtatcataaacaacccagtcccctagtccatcaaactcaaacataatcttcacctccccactcttcaaagcataaatcacaattaaaaactccaccaccaaccctaaaacaaatgctcctagtacaactttattagaaacccaaacctcaggatactgttcagtagccatagctgttgtataaccaaatactaccagcattccccccaaataaatcaaaaacaccattaaccccaaaaacgaaccaccaaaactcaaaataactccacatccaacaccaccacccacaatcaaccctaaacccccataaataggtgaaggctttgaagaaacccccacaaaactaattacaaaaataatacttaaaatgaaaacaatatacattatcattattctcacatggacttcaaccatgaccaatgacatgaaaaatcatcgttgttattcaactacaagaacaccaatgaccaacatccgaaaaacacacccactaataaaaatcgtcaacgacgcattcgtcgatctccccaccccatcaaatatctcttcatgatggaacttcggctccctactcggcctctgcttaattatacaaatcctaacaggcctattcctagcaatacactacacaccagacacaacaaccgccttctcatcagtcacacacatctgccgagacgtgaattacggctgaattatccgatacctacatgcaaatggggcttctatattcttcatctgcctctacgctcacataggacgaggcctatactacggctcctacgccttccgagaaacatgaaatattggagttattctactattcacagttatagccaccgcattcgtaggctacgtcctgccctgaggacaaatatcattctgaggcgcaactgtaatcactaacctcctatcagcaatcccatacattggtaccaccctagtcgaatgaatctgaggcggtttctctgtagataaagcaacactaacacgcttttttgcctttcactttatcctccccttcatcatcctagcattagcaattgtccaccttattttccttcacgaaacaggatccaacaaccccacaggcatcccatccgacatagataaaatcccattccacccctaccacacaattaaagacattctaggtgccctattactaatcctaatcctactaatactaaccctattcgcacccgacctacttggagacccagacaactataccccagcaaacccactcagtaccccagcacacattaaaccagaatggtattttctattcgcatacgcaatcctacgatcaatccccaacaaactaggcggagtcttagccctactactctcaatcctaatcctagccttcatcccaatactccacacatccaatcaacgaagcataatatttcgaccctttagccagttcttgttctgagtcctagtcgcagatctactaaccctaacatggatcggcggccaaccagtagaacacccctacataattgtaggccaactcgcatccatcctctatttcctcttaattctagtattaataccagtaactagtcttatcgagaacaaacttataaaatgaagagtctttgtagtataattaaataccccggttttgtaaaccggaaaaggagacaagacacacctccctaagactcaaggaagaagtattacactccaccatcagcacccaaagctgaagttctacataaactattccctgaaaaagtatattgtacaataaccacaggaccacagtactatgtccgtattgaaaataacttgccttattagatattattatgtaactcgtgcatgcatgtacttccacataattaatagcgtctttccatgggtatgaacagatatacatgctatgtataattgtgcattcaattattttcaccacgagcagttgaagctcgtattaaattttattaattttacatattacataatatgtattaatagtacaatagcgcatgttcttatgcatccccagatctatttaaatcaaatgattcctatggccgctccattagatcacgagcttagtcagcatgccgcgtgaaaccagcaacccgcttggcagggatccctcttctcgcaccgggcccatcactcgtgggggtagctatttaatgatctttataagacatctggttcttacttcaggaccatattaacttaaaatcgcccactcgttccccttaaataagacatctcgatgg
data/examples/genes/graySeal.txt ADDED
@@ -0,0 +1 @@
1
+ actaatgactaatcagcccatgatcacacataactgtggtgtcatgcatttggtatcttttaaatttttaggggggaaagcggtatcactcagctatgaccgtaaaggtctcgacgcagtcaaataacttgtagctggacttaattaatatcatttaccaacatcatacaaccatgaggcgcattttagtcaatggtagcgggacatagttacgttacgtacacgtacacacacgcgcacgcacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacacacgcgcacgcacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacacacgcgcacgcacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacaataagtacatatacgttacgttaaatagatacaaagttagctagaacaaaccccccttaccccccgttaactccaacgagcatacaatgcacctactattgctctgccaaaccccaaaaacagagctagatgcatataacacacaactgaagccagtacatctaaacttagtaaaaccaaccaacctaagtaacagattactaaaacacgggcataatactttaattttgaatctatctatagatgaacgtttttcatctctaatacccccctattgacttattgaccccataccaacagaaacaagccacacgccactggttaatgtagcttaataaaccaaagcaaggcactgaaaatgcctagatgagccataaggctccataaacacaaaggtttggtcctggccttcctattagtttttaataagattatacatgcaagcctccgcgccccggtgaaaatgccctcaaatcccaacaaccgatcaaaaggagcgggtatcaagcacactaaacaagtagcttacaacgccttgctcaaccacacccccacgggatacagcagtaataaaaattaagctatgaacgaaagttcgactaagctatattaaacctccagggttggtaaatttcgtgccagctaccgcggtcatacgattaacccaaactaataggccctcggcgtaaagcgtgttaaagatcaacccacactaaagctaaaacctaaccaagccgtaaaaagctaccgttaacataaaataaactacgaaagtgactttactaactctgacagcacgatagctaagacccaaactgggattagataccccactatgcttagccctaaacataaataattcacgtaacaaaattattcgccagagaactactagcaacagcttaaaactcaaaggacttggcggtgcttcacacccctctagaggagcctgttctgtaaccgataaaccccgataaacctcaccactccttgctaatacagtctatataccgccatcttcagcaaacccttaaaaggaacaaaagtaagcacaataatcgctacataaaaaagttaggtcaaggtgtaacctatggagtgggaagaaatgggctacattttctaaataagaacaactatacgaaagtttttatgaaactaacaaactaaaggtggatttagtagtaagctaagaatagagagcttagctgaaccgggccatgaagcacgcacacaccgcccgtcaccctcctcaaataaacactacaagctacataaaaccaacacaaaacatatagaggagataagtcgtaacaaggtaagcatactggaaagtgtgcttgggtaaatcaaagtgtagcttaaacaaagcgtctggcttacacccagaagatttcacacccagtgaccactttgaaccaaagctagcccaaataacaaacaactaaactacaaagcaaacatcaaacaaaacatttagtcatacattaaagtataggagatagaaatttttaaccaggagctatagagacagtaccagcaagggaaagatgaaagagaattcaaagtaaaaaatagcaaagattaccccttctaccttttgcataatgaattagctagaacaacttaacaaagagaacttaagctaagccccccgaaaccagacgagctacctgcgaacaatcccctgggatgaactcatctatgtggcaaaatagtgagaagattcgcaggtagaggtgaaaagcctaacgagcctggtgatagctggttacccagaatagaatttcagttcaactttaaacttacctaaaacccaagaattttaatgtaagcttaaaatatagtctaaaaaggtacagctttttagatcaaggatacaaccttacttagagagtaaacacaaattagaccatagtaggcctaaaagcagccatcaattaagaaagcgttaaagctcaacaattcaatcaacataataccaaaagaactcaaacaactcctaacgtacatctgggtcaatctattcaattatagttgagacaatgctaatatgagtaacaagaaaccttttctccttgcataaacttataaccgaaatggatatccactgatagttaacaacaagataaaactaaccaaccaattaattatacctatcaaactaattgttaagccaacacaggaatgcaaccaaggaaagattaaaagaagtaaaaggaactcggcaaacacaaaccccgcctgtttaccaaaaacatcacctccagcattactagtattggaggcactgcctgcccagtgacataagttaaacaaccgcggtatcctgaccgtgcaaaggtagcataatcatttgttctataaataaggacttgtatgaacggccacacgagggtttaactgtctcttacttccaatcagtgaaattgaccttcccgtgaagaggcgggaatagaataataagacgagaagaccctatggagctttaattaactaactcaacagaacaaatccagtcaaccaacagggaataaaaatttctataatgagttagcaatttaggttggggtgacctcggagaacaaaacaacctccgagtgatataaactaagacaaaccagtcaaagtgccgcatcattaattgatccaaaaatttttttgatcaacggaacaagttaccctagggataacagcgcaatcctattcgagagtccatatcgacaatagggtttacgacctcgatgttggatcaggacatcctaatggtgcagcagctattaagggttcgtttgttcaacgattaaagtcctacgtgatctgagttcagaccggagtaatccaggtcggtttctatctattaaccagttcctcccagtacgaaaggacaagagaaacaaggcccacctcaacacaggcgccttaagactaatagatgatataatcttaatctagccagtctaatcccccatgaatccaagaaacaggacctgttagggtggcagagccggcaattgcataaaacttaaacctttatcttcagaggttcaactcctctccctaacactatgtttataattaatatcatctcactaattatcccaattctcctcgccgtagctttcctaacattagtagaacggaaagtactaggctacatacaactccgaaaaggacccaacatcgtaggaccctatggactcctacaacccatcgcagacgccgtaaaactattcaccaaggaacccctacgaccactaacatcttccacaaccatattcattatagcccctattctagccttaaccttagccctaactatgtgagtccccctgcccataccatatcccctcatcaacataaacctaggagtgttattcatactagcaatatcaagcctagctgtctactcaatcctatgatccggatgggcctcaaactcaaaatacgccctaatcggagccctacgagccgtagcccaaacaatttcatacgaagtgaccctagccattatccttctatcagtcctactaataaacggatccttcaccctatccacactaatcattactcaagaacacttatgactaatctttcccgcatgaccactagccataatatgatttatctccaccctagcagaaaccaaccgcgccccatttgatctcacagaaggagaatcagaacttgtctcaggatttaacgtagaatacgcagcaggcccattcgctatattcttcttagcagaatacgctaacatcatcatgataaacatcttcacaaccctcttattcttcggagcatttcacaacccatacatacctgaactatatgtcgtcaactttaccgtaaaaaccctggcactaacaattctattcctatgaatccgggcatcatacccgcgattccgatacgaccaactaatacatcttctatgaaaaaacttcctaccccttacactagccctatgtatatgacatgtaaccctacccatcatctcagcaagcattccccctcaaacataagaaatatgtctgacaaaagagttactttgatagagtaaataatagaggtttaaaccctcttatttctagaacaataggaatcgaacctaatcctaagaattcaaaaatctccgtgctacccaaatacaccatattctagagtaaggtcagctaaataagctatcgggcccataccccgaaaatgttggtttattcccttcccgtactaataaaaccccctattctcattatcattatatcaaccgttatatcagggaccataatcgtcctcacgagctcccattggctgctgatctgaattggctttgaaataaacatgctagcgattatcccaatcctgataaaaaaccacaccccacgagctacagaagcatccacaaaatatttcctaacacaggccaccgcatctatactcctaatgataggcattatcatcaacctaatattctcgggagaatgatcaatctcaaaaatccctaaccccatcgcatcaggcctagtaaccattgctctaacaataaaactcggtatagcccctttccacttctgagtgcccgaagtgacacagggaatctcactatcctcaggcataatcctactcacatgacaaaaaattgcaccactatccattctctatcaaatttcaccatccattaaccccaaactactaattaccatagcaatcgcatcagtactgatcggaggctgaggaggactaaatcaaacccaactccgaaaaatcctagcctactcatcaatcgcccatataggatgaatagctgtcattctaacatacaaccccaccctaataatcctaaacctcacaatctacattacaataaccctaagcacattcatactattcatgcacaactcatccacgacgacactatcactatcaaatacatgaaataaactaccgctcatgacatcgctaatcctagtactaataatatcactaggaggcctcccacctctatcaggctttgcgcccaaatgaataattattcaagaattaacaaaaaacgatataattattctaccaacattcatggccatcacagcactattaaacctatacttctacatacgcctatcctataccacagcactaaccatattcccctcagtaaacaacataaaaataaagtgacaattcgaaagtgcaaaaaaaattatccttctgccaccactaatcatcatctcgaccatactactccccataaccccaataatatccatcctagaatagagatttaggctaaaatagaccaagggccttcaaagccctaagtaagtattactaacttaatctctgtaaatcgacctaaggactgcaagactctatcttacatcaactgaatgcaaatcaactactttaattaagctaagcccttactagatcggtgggcctctatcccacgaaactttagttaacagctaaaaaccctagtcaactggcttcaatctacttctcccgccgcgtagaaaaaaaaggcgggagaagccccggcaggttgaagctgcttctttgaatttgcaattcaacgtgacattcaccacaggacttggtaaaagggggactcagacccccatagttagatttacagtctaatgcttctatcagccattttacctatgttcatagatcgatggttattttccacaaatcataaggatatcggcactctttatttgctgtttggcgcatgagctggaatagcaggcaccgcccttagtctcttaatccgcgcagaactaggacaacctggcgccctactaggagatgaccaaatttacaacgtaattgtcaccgcccatgcatttgtaataattttcttcatagtaatgcctatcataattggcggctttgggaactgactagtgcccttaataattggagctcctgatatagcattcccccgaataaataatataagtttctgacttttaccgccatcctttctactactactggcctcctctatagtagaagcaggtgccgggaccgggtgaaccgtttatcctcccctagctgggaacctggctcatgcaggggcatctgtagatctaacgattttctccctccacttagcgggtgtatcatctattcttggggctatcaacttcatcactactatcattaatataaaaccccctgcaatgtctcaataccaaactccactgttcgtgtgatccgtattaatcacggcagtactcctgctattgtcactaccagtcctagcagctggcatcaccatgctactcacagaccgaaacctgaatacaacattcttcgaccctgccggaggaggtgatcctatcctgtatcaacatctattctgattcttcggacatcccgaagtgtatattctaatcctaccaggattcggaataatctcacacattgttacctactattcagggaaaaaagaaccttttggctatataggaatagtttgagcaataatgtccatcggcttcctgggcttcattgtatgagcccaccatatattcactgtagggatggacgtcgacacacgagcatacttcacttcagccactataattattgcaattccgacaggagttaaagtattcagctgactagctacccttcatgggggcaatatcaagtgatctccagccatattatgagccctgggctttatcttcctatttacagtgggaggccttacaggcatcgtactagccaactcatcactagacattgtcctgcatgacacatattatgtagtagcacatttccattatgtcttatcaataggagcagtattcgctattatgggtggattcgtccattgattccccctattctcaggctatacactcgacaacacttgagcaaaaattcacttcacaatcatgttcgtaggagtcaacataacattctttccccaacacttcctaggtctatcaggaatacctcggcgatactccgactacccagacgcctacactacatgaaatacagtctcctccatgggctcattcatttcactcacagcagtgatattaatggtattcataatctgagaagctttcgcatctaagcgagaagtagcagcagttgaattaactacaactaatatcgaatgactgcatggatgtccccctccttaccacacatttgaagagcccacctacgtcgtactaaaataagaaaggaaggagtcgaaccctctgaaactggtttcaagccaataccataacccttatgtctttctcaattaagaggcattagtaaaaattacataactttgtcaaagttaaattataggtggaaaccctttatgcctccatggcataccccctacaaataggcctacaagatgcaacctctcccattatagaggagttactacacttccatgatcacacattaataattgtatttctaattagctcattagtactctacattatttcactcatgctaaccacgaaacttacccacacaagtacaatagacgcacaggaagtggaaacagtatgaacaatcctacccgctattattttaatcctcattgccctaccatcattgcgaatcctctacataatggacgaaatcaataatccttccttgaccgtaaaaactataggacatcagtgatactgaagctatgaatacacagactacgaagacctgaactttgactcatacatgatccctacacaagaactaaagcccggagaactacgactgctagaagtagacaaccgagtggtcctcccaatagaaataacaatccgcatgctaatctcatcggaagatgtactccactcatgagccgtaccgtctctaggactaaaaactgatgctatcccaggacgactaaaccaaacaaccctaatagccatacgaccaggactgtactacggtcaatgctcagaaatctgtggttcaaaccatagcttcatacctattgtcctcgaattggtcccactatcccacttcgagaagtgatctacctcaatgctttaatcattaagaagctatatagcgttaaccttttaagttaaagactgagagtactctaacctctccttaatgaaatgccacagttagatacatcaacttgactcattataatctcatccataatcctaaccttattcatcacgtttcacctaaaagtctctaaacactacttcccaacaaacccagaaccaaaacacacgctgctattaaaaaacagtgcaccctgagaagaaaaatgaacgaaaatctattcgcctctttcactacccctacaataataggtcttcctatcgtaatcctaattgtcctattcccaagcatcctatttccatctcccgaccgactaatcaataatcgcctcacctcaattcaacaatgattaatccaattaacatcaaaacaaatgttgtcaatccataaccataaaggacagacatgagcacttatacttatttcacttattctatttattggatccactaacctgctaggcctcctgcctcactcattcacccctaccacccaactatccataaacttaggaatggctatccccctgtgagcaggaacagtaatcacaggttttcgacacaaaacaaaagcatccctagcccacttcctaccccaaggaacacctctacccctcattccaatactagtgatcatcgaaactattagcctgttcattcaacccatagccttagccgtgcgactaacggccaatattactgcaggtcacctactaattcacctaatcggaggagctaccctcgcccttatagacattagcaccactacagcattcattactttcatcgtccttatcctactcactatccttgaatttgctgtagccctcattcaagcctatgtcttcacactgctagtaagcttatatctacatgacaatacctaatgacccaccaaacccatgcataccacatagtcaaccccagtccatgacccctaacaggagccctctcagcccttctcatgacatccggcctaattatgtgattccactttaactcaatatacctactaatgctaggcctcactaccaacaccctgactatataccaatgatgacgagatattgtccgagaaagtacattccaaggtcaccatactccaattgtccaaaaaggcttacgatatggtatgatcctctttatcgtatcagaagtattcttcttcgctggttttttctgagccttttaccactccagcctagcacccacccccgagctgggaggatgctgaccacccacaggtatcacccctctaaaccctatagaagtcccacttctaaatacttctgtcctcttagcatcaggagtatcaattacttgagctcaccatagcctaatagaaggaaaccgcaagcacatacttcaagcactattcattaccatctctctaggcgtctacttcacattactacaagcctcagaatactacgagactcctttcacaatttccgacggaatttacggctctaccttcttcatggcaacaggattccatggactgcacgtaatcatcggttcaactttcctaattgtatgcttcatacgacagctaaaatttcacttcacatctaaccaccatttcggctttgaagctgccgcctgatactgacatttcgtagacgtagtatgactgttcctatacgtatccatctattgatgaggatctgcttccttagtataattagtatagttgacttccaatcaaccagctctggttaaatccagaaagaagcaataaacatagcattaaccctatttaccaacacagccctagcctctctactcgtactaattgcattctgactccctcagctaaatacatactcagaaaaagtcagcccctacgaatgtggatttgaccccataggatcagcacgcctacccttctccataaaattctttctagtagctatcacattcctactattcgacctagaaattgccctactccttccacttccatgagcatcgcacacagataacctaaccaccatacttaccatagcactactactcatctctctcctagccgcaagcctagcctacgaatgaactgaaaaggggctagaatgaacagaatatgataattagtttaacccaaaacaaatgatttcgactcattagattatgacttatatcataattatcaaatgtccatagtatatgccaacatcttcttggccttcattatatctcttataggactacttatataccgatcccacctgatatcctccctactctgcctagaaggtatgatactatcattatttgtaataataacagtaacaatcctgaacaaccattttacactagctagcatggcccccattatccttctcgtcttcgctgcttgtgaagcagccctgggactgtcactcctagtaatagtgtccaacacatacggaaccgactacgtacaaaatctgaacctcctacaatgctaaaaatcattatccccaccataatacttatacccctgacgtgaatatcaaaacctaacatgatctgaatcaacacaacagcctatagcctactaatcagccttatcagtctgtccttcctaaatcaactcggtgacaattgcataagcctgtccctactattcttcacagactccctatcagctcccctattagcacttacaacatgactgttacccttaatacttatggctagccaatttcacctatcaaaagagccactagcccggaaaaaactttatatcacaatactaatcctactacaactattcctaatcataacatttaccgctacagaactaatcatattttacattctatttgaagcaaccctagtacctactctgattattattacccgatgggggaaccaaacagaacgcctaaatgcaggaacgtacttcctattttacactctagtaggatccttgcccctgctagtagccctgctatttatccaaaataatataggcacattaaacttcctaataatccaactctgagcccaacccctaccaagctcctgatctaataccctcctatgattagcatgtataatggcattcatagtaaaaatacccctatacggcctccacctatgactgcctaaagcccacgtagaagcacccatcgctggatccatagtactggccgcagtacttctaaaactagggggctatggcatgatacgaattacagcactactaagcccactaacaagcttcatggcataccccttcataatactatcactatgaggtataaccataactagctccatctgcttacgccaaacagacctaaaatccctaattgcatactcctccgtcagtcacatagccctagtcatcgtagcaatcctcatccaaacaccatgaagttacataggagcaacagccctaataatcgcccacggtttaacatcatccgtattattctgcctagccaattccaactacgaacgcacccacagtcgaactataatcctcgcacgcggtctgcaagtgctcctccccttaatagcagcctgatggctattggcaagtcttaccaacctggcacttccgcctaccatcaatctaatcggagagctattcgtagtaatagcctcattttcatggtccaacattactattatcctaataggaaccaacatcatcattaccgccctatattcactgtacatactaattaccacacaacgcggcaaatatacctaccacatcaaaaacatcaaaccctcattcacacgagaaaacgccctaataacgctccacctaatacccctactactactatcactcaaccccaaagtcattctaggacccatctactgtaaatatagtctaaaaaagatattagattgtgaatctaatgacaaaagctcaaacctttttatttaccgaaaaagaatgcaagaactgctaactcatgcccccacgtataaaaacgtggctttttcaacttttaaaggatagaagtaatccattggtcttaggaaccaaaaaattggtgcaactccaaataaaagtaattaacttattcgcttcctctatcatcacaacactatccatactaacactcccaatcgtcttaaccagcacctcaatctacaaaaacaagctttacccgcaatacgtaaaaaccgccatttcatacgccttcataatcagtatgatccccacaacaatattcatctattcaggacaggagataattatctcaaactgacactgaatgacaattcaaaccataaaacttacacttagctttaaactagaccatttctccataattttcgtacctgtggccctcttcgttacatgatctattatagaattttcaatatgatacatacactcagatcctttcatcaaccgattcttcaaatacctactaatattcctcatcaccatgatgattttagttaccgcaaacaacctatttcagctattcatcggctgagagggagtgggtatcatatcattccttctcatcgggtggtgacacggacgaaccgacgcaaatacagccgccctccaggcagtcctctataatcgcattggagacgtaggctttatcatagccatagcatgattcttaattaatctaaacacatgagaactccaacagatcttcatttcccaccacaacaacctaaacgtaccacttataggcctcctcctagcagcaactggaaaatcagctcaattcggacttcacccatgactgccttcagccatagaaggacctaccccagtatccgccctactccattcaagtaccatggtcgtagcaggagttttccttctaattcgatttcaccctctaatagaacacaacacgataatacaaacaaccaccctatgcctaggggctatcaccaccctattcacagcaatctgcgcactcacccagaacgacatcaagaaaatcatcgcattctcaacctcaagccaactaggactcataatcgtcacaatcggtatcaaccaaccacacctggcattcctacacatctgcacccacgcattcttcaaagctatattatttctatgctccggatctatcattcacaacctaaacgatgagcaagatattcgaaaaatgggaggtttatacaaagtactaccattcaccactacctcattaattgtaggaagcttagcactcacaggaatgcccttcctcacaggattctactccaaagacctaatcatcgaaaccgccaacacgtcgtataccaacgcctgagccctattactaaccctcgtcgccacatccataacagcagcctacagcactcgaattatattcttcgcactcctagatcagcctcgatttaaccccataattacaatcaacgagaacagcccactcctaattaatcccattaaacgcctactactaggaagcatttttgcagggtacttaatctcctacaacattacacccacctccactccacaaataactataccccattacctaaaactgatagccttaaccgtaacgcttctgggcttcatcctagcactagaactgaacctcacttcacaaagccttaaactcaaacacccatcaaacctattcaaattctccaacctcctcggatacttccccactattatccaccgctacatgccgatagtaaacttatcagctagccaaaaactagcctcaacactactagatgcaatctggctagaaaatgcattaccaaaatccatctcttactttcacataaaatcatcagtcactatctccaatcagaaaggtctaatcaaactatacttcctctccttcatcatcaccttaatcctcgccctaataataattaattcccacgagtaacctccatgatcactagtaccccaataaaaagagatcacccagtcacaataaccaaccaagtaccataactatataaagccgcaatacccatagcctcctcactaaaaaatccagaatcccctgtatcataaatcacccaatcacccataccattaaactcaaatacagcatcaacctcatcatcctttaaaatatagcaggcaagcagtaactctgacaacaagcccataacgaacgcacccaacacagccttattagacactcagacttcaggatactgctcagtagccatagcagtcgtataaccaaaaacaacaagcatacctcccaagtaaatcaaaaaaaccattagacctaaaaaagaccctccaaagctcaacacaataccacaaccaacagccccactaataatcaaaacaagcccaccataaatgggggaaggcttagaagaaaatcccacgaaactaataacaaaaataatacttaaaataaacacaatatatgtcatcattattcccacatggaatctaaccatgaccaatgacatgaaaagccatcgttgtaattcaactatgagaacactaatgaccaacatccgaaaaacccatccactaataaaaattatcaacaactcatttatcgacctacccacaccgtcaaatatctcagcatgatgaaactttggatctcttctcggaatctgcctaatcctacagatcttaacaggcttattcctagccatacactacacctcagacacaaccacagccttctcatcagtaacccacatctgccgagacgtaaactacggctgaatcatccgttatcttcacgcaaatggagcttccatattcttcatctgcctatacatgcatgtgggacgaggactatattacggctcttacacattcacagagacatgaaacatcggcattatcctcttattcaccatcatagccacggcattcatgggctacgtcctaccatgaggacaaatatcattttgaggggcaacagtcattaccaatctactatcagcaatcccctatatcggaaccgaccttgtacaatgaatctgaggaggattttcagtagacaaagcaaccttaacaggattcttcgccttccacttcatcctaccattcgtagtattagcactagcagcagtccacctactattcctacacgaaacaggatcaaacaacccctccggaatcatacccgactcagacaaaatcccattccacccgtactatacaattaaagacatcctaggagccctgcttctcattctagtcctgacactactagtactattctcacccgacctattgggagaccccgacaactacatccctgccaatcccctaagcaccccaccacatatcaaacccgaatgatacttcctattcgcctacgcaatcttacgatccatcccaaacaaactaggaggagtgctggccctggtactctccattctcatcctcgctatcgtacccctgctccacacatcaaaacaacgaggaataatattccgacccatcagccaatgcctattctgacttctagtagcagacctacttacactgacatgaatcggaggacaaccagtcgaacacccctatattaccatcggtcaactagcctcaatcctatactttataatcctcttagtactcatacccattgccagcattattgaaaataatatcctaaaatgaagagtctttgtagtatactatattaccttggtcttgtaaaccaaaaatggagaacataaccctccctaagactcaaggaagaggtaaacaaccccaccaccagcacccaaagctgacattctaattaaactattccctgacatccactcaaccccccttcactcctcaattcatatataatgccactttactgtgctatcacagtattcacgcacctggcccatgtacttcgtgcattgcatgctcccccccatcctcagacctcctatgtatatcgtgcattaatggtttgccccatgcatataagcatgtacatgaaatggttgattttacatgtacggcatacagttgtaacgccaaacttcagagtataactacctgtaatgagtgcatttcacctagtccaagagccttagtcaccatgcctcgggaaatcagcaacccttgtgaaacgtgtacctaaacctcgctccgggcccataacatgtgggggtttctatactggaactatacctggcatctggttcttacttcagggccatgaaagtcctagaatccaatcctactaacccttcaaatgggacatctcgatgg
data/examples/genes/harborSeal.txt ADDED
@@ -0,0 +1 @@
1
+ actaatgactaatcagcccatgatcacacataactgtggtgtcatgcatttggtatcttttaaatttttaggggggaaagcggtatcactcagctatgaccgtaaaggtctcgacgcagtcaaataacttgtagctggacttaattaatatcatttaccaacatcatacaaccatgaggcgcattttagtcaatggtagcgggacatagttacgttacgtacacgtacacacgtacgcacgtacacgtacacacgtacgcacgtacacgtacacacgtacgcacgtacacgtacacacgtacgcacgtacacgtacacacgtacgcacgtacacgtacacacacgcacgtacacgtacacgtacacgtacacgtacacacacgcacgtacacgtacacgtacacgtacacacgtacgcacgtacacgtacacgtacacgtacacgtacgcacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacgtacacacgtacacacgtacacgtacacacgtacacgtacacgtacacgtacacgtacacataagtacatgtacgttacgttaaatagatacaaagttagctagaacaaaccccccttaccccccgttaactccaacgagtatacaatgcacctactattgctctgccaaaccccaaaaacagagctagatacatataatacacaattgaagccagtacatctaaacttagtataaccaaccaacctaagtaacagactactaaaacacgggcataacactttaattttgaatctatctatagatgaacgtttttcatctctaatacccccctattgacttattaacctcataccaacagaaacaagtcacacgccactggttaatgtagcttaataaaccaaagcaaggcactgaaaatgcctagatgagccacaaggctccataaacacaaaggtttggtcctggccttcctattagtttttaataagattatacatgcaagcctccgcgccccggtgaaaatgccctccaaatcccaataaccgattaaaaggagcaggtatcaagcacactaaacaagtagcttacaacgccttgctcaaccacacccccacgggatacagcagtaataaaaattaagctatgaacgaaagtttgactaagctatattaaacctccagggttggtaaatttcgtgccagccaccgcggtcatacgattaacccaaactaataggccctcggcgtaaagcgtgttaaagatcaacccacactaaagctaaaacctaaccaagccgtaaaaagctaccgttaacataaaatagaccacgaaagtgactttactaattctgactgcacgatagctaagatccaaactgggattagataccccactatgcttagccctaaacataaataattcacgtaacaaaattattcgccagagaactactagcaacagcttaaaactcaaaggacttggcggtgcttcacacccctctagaggagcctgttctgtaatcgataaaccccgataaacctcaccattccttgctaatacagtctatataccgccatcttcagcaaacccttaaaaggaacaaaagtaagcacaataatcgctacataaaaaagttaggtcaaggtgtaacctatggaatgggaagaaatgggctacattttctaaataagaacaatcatacgaaagtttttatgaaattaacaaactaaaggtggatttagtagtaagctaagaatagagagcttagctgaaccgggccatgaagcacgcacacaccgcccgtcaccctcctcaaataaactctacaagctacataaaaccaacacaaaacatacagaggagataagtcgtaacaaggtaagcatactggaaagtgtgcttggataaaccaaagtgtagcttaaacaaagcgtctggcttacacccagaagatttcacacccaatgaccactttgaactaaagctagcccaaataacaaacaactaaactacaaagcaaacatcaaacaaaacatttagtcatacattaaagtataggagatagaaattttaactggagctatagagacagtaccgcaagggaaagatgaaagagagttcaaagtaaaaaatagcaaagattaccccttctaccttttgcataatgagttagctagaacaacttaacaaagagaacttaagctaagccccccgaaaccagacgagctacctacgaacaatcccctgggatgaactcatctatgtggcaaaatagtgagaagatttgcaggtagaggtgaaaagcctaacgagcctggtgatagctggttacccagaatagaatttcagttcaactttaaacttacctaaaaccccaagaattttaatgtaagcttaaaatataatctaaaaaggtacagctttttagatcaaggatacaaccttacttagagagtaaacataaataagaccatagtaggcctaaaagcagccatcaattaagaaagcgttaaagctcaacaatttaatcaacataataccaaaagaactcaaaacaactcctaacgtactactgggtcaatctattcaattatagaagaaacaatgctaatatgagtaacaagaaaccttttctccttgcataaacttataaccgaaacggatatccactgatagttaacaacaagataaaattaactaaccaattaatacacctatcaaactaattgttaagccaacacaggaatgcagccaaggaaagattaaaagaagtaaaaggaactcggcaaacacaaaccccgcctgtttaccaaaaacatcacctccagcattactagtattggaggcactgcctgcccagtgacgtaagttaaacggccgcggtatcctgaccgtgcaaaggtagcataatcatttgttctataaataaggacttgtatgaacggccacacgagggtttaactgtctcttacttccaatcagtgaaattgaccttcccgtgaagaggcgggaataaaataataagacgagaagaccctatggagctttaattaactaactcaacagagcaaatccagtcaaccaacagggaataaaaacttctacaatgagttagcaatttaggttggggtgacctcggagaacaaaacaacctccgagtgatataaactaagacaaaccagtcaaagtgccacatcactaattgatccaaaaatttttgatcaacggaacaagttaccctagggataacagcgcaatcctgtttgagagtccatatcgacaatagggtttacgacctcgatgttggatcaggacatcctaatggtgcagcagctattaagggttcgtttgttcaacgattaaagtcctacgtgatctgagttcagaccggagtaatccaggtcggtttctatctattaaccagttcctcccagtacgaaaggacaagagaaacaaggcccacctcaacacaggcgccttaagactaatagatgatataatctcaatctaaccagtctaatcccccatgagtccaagaaacaggacttgttagggtggcagagccggcaattgcataaaacttaaacctttatcttcagaggttcaactcctctccctaacactatgtttataattaatatcatctcactaattatcccaattctcctcgccgtagctttcctaacattagtagaacggaaagtactaggctacatacaactccgaaaaggacccaacatcgtaggaccctacggactcctacaacccatcgcagacgccgtaaaactattcaccaaagagcccctacgaccactaacatcttccacaaccatattcattatggcccctattctagccttagccctagccctaactatatgagtccccctgcccataccataccccctcatcaacataaacctaggagtgttattcatactagcaatatcaagcctagctgtctactcaatcttatgatccggatgggcctcaaactcaaaatacgccctaatcggagccttacgagccgtagcccaaacaatctcatacgaagtaaccctagccattatccttctatcagtcttactaataaacggatccttcaccctatccacactaatcattactcaagaacacttgtgactaatcttccccgcgtgaccactagccataatatgatttatctccaccctagcagaaaccaaccgtgccccatttgacctcacagaaggagaatcagaacttgtttcaggattcaacgtagaatacgcagcaggcccattcgctatgttcttcttagcagaatacgctaacatcatcataataaacatcttcacaaccctcttattcttcggagcatttcacaacccatatatacctgaactatatgttatcaactttaccgtaaaaaccctggcactgacaattctattcctatggatccgggcatcatacccacgattccgatacgaccaactaatacatcttctatgaaaaaacttcctaccccttacactagccctatgtatatgacatgtaaccctacccatcacctcagcaagcattccccctcaaacataagaaatatgtctgacaaaagagttactttgatagagtaaataatagaggttaaaaccctcttatttctagaacaataggaatcgaacctaatcctaagaattcaaaaatctccgtgctacccaaatacaccatattctaaagtaaggtcagctaaataagctatcgggcccataccccgaaaatgttggtttatccccttcccgtactaataaaaccccctattctcatcatcattatatcaaccgttatatcagggaccataatcgtcctcacgagctcccattggctactgacctgaattggctttgaaataaacatactagcgattatcccaatcctgataaaaaaccataccccacgagctacagaagcatccacaaaatatttcctaacacaggctaccgcatctatactcctaataataggcattattatcaacctaatattctcaggagaatgaacaatctcaaaaatccccaaccctatcgcatcaggcctagtaaccattgctctaacaataaaactcggcatagctcctttccacttctgagtgcccgaagtgacacaaggaatctcactatcttcaggcataattctactcacatgacaaaaaattgcaccactatccgttctctatcaaatttcaccatccattaaccccaaactattaattaccatagcaatcgcatccgtactgatcggaggctgaggaggactaaatcaaacccaactccgaaaaatcctagcctactcatcaatcgcccatataggatgaataactgtcatcctaacatacaaccctaccctaatagtcctaaacctcacaatctacattacaataaccctaagcacattcatactatttatgcacaactcatccacaacgacactatcactatcgaacacatgaaataaactaccgctcatgacatcgctgatcctaatactaataatatcgctaggaggcctcccacccctatcaggctttgcacccaaatgaataatcattcaagaactaacaaaaaacgatataattattctaccaacattcatggccatcacagcactattgaacctatacttctacatacgcttatcctacagcacagcactaaccatattcccctcagtaaacaacataaaaataaaatgacagttcgaaagtgcaaaaaaaatcatcctcctaccaccactaatcatcatctcaaccatactactccccataaccccaataatatccatcttagaatagagatttaggctaaaaagaccaagggccttcaaagccctaagtaagtactactaacttaatctctgtaaatcgacctaaggactgcaagactctatcttacatcaactgaatgcaaatcaactactttaattaagctaagcccttactagatcggtgggcctctatcccacgaaactttagttaacagctaaaaaccctagtcaactggcttcaatctacttctcccgccgcgtagggaaaaaaggcgggagaagccccggcagggttgaagctgcttctttgaatttgcaattcaacgtgacattcaccacaggacttggtaaaagggagactcaaacccccataattagatttacagtctaatgctcttatcagccattttacctatgttcataaatcgatggttattttccacaaatcataaggatatcggcactctttatttgctgtttggcgcatgagctggaatagtaggcaccgccctcagtctcttaatccgcgcagaactaggacaacctggcgccctactaggagatgaccaaatttacaacgtaattgtcaccgcccatgcattcgtaataattttcttcatggtaatgcccatcataattggcggctttgggaactgactggtgcccctaataattggagctcctgatatagcattcccccgaataaataacataagtttctgacttttaccaccgtccttcctactactactggcctcctctatagtagaagcaggtgccggaaccgggtgaaccgtttatcctcccctagctgggaacctggctcatgcaggagcctctgtagatctaacaattttctcgctccacttggcaggtgtatcatctattcttggagctatcaacttcatcactaccatcattaatataaaaccccctgcaatgtctcaataccaaactccactgttcgtatgatccgtattaatcacagcggtgctcctactattgtcactaccagtcctggcagctggcatcaccatgctactcacagaccgaaacctgaatacaacattcttcgaccctgccggaggaggtgatcctatcctgtatcaacatctgttctgattcttcggacatcctgaggtgtatattctaatcctaccaggattcggaataatctcacacatcgttacctactattcaggaaaaaaagaaccttttggttatataggaatagtttgagcaataatgtccatcggcttcctgggcttcattgtatgagcccaccatatatttactgtagggatggacgtcgacacacgagcatacttcacttcagccactataattattgcaattccaacgggagttaaggtattcagctgactagctacccttcatgggggcaatatcaaatggtctccagccatattatgagccctgggctttatcttcctatttacggtagggggcctcacaggtatcgtactagccaactcatcactagacattgtccttcatgacacatactatgtggtagcacatttccattatgttttatcaataggagcagtattcgctattatgggtggattcgtccattgattccccctattctcaggctatatactcgacgacacttgagcaaaaattcacttcacaatcatattcgtaggagtcaacataacattctttccccaacacttcctaggtctatcaggaatacctcggcgatactccgactacccagacgcctacacgacatgaaatacagtctcctccatgggctcattcatttcacttacagcagtgatattaatagtattcataatctgagaagctttcgcatccaagcgagaagtagcggcagttgaattaactacaactaatatcgaatgactgcatggatgtccccctccttaccacacatttgaagagcccacctacgtcgtactaaaataagaaaggaaggagtcgaaccctctgaaactggtttcaagccaacaccataacccttatgtctttctcaattaggaggcattagtaaaaattacataactttgtcaaagttaaattataggtggaaaccctttatgcctccatggcataccccctacaaataggcctacaagatgcaacctctcccattatagaggagttactacacttccatgaccacacattaataattgtgttcctaattagctcattagtactctacattatctcacttatactaaccacgaaactcacccacacaagtacaatagacgcacaagaagtggaaacggtgtgaacgatcctacccgctatcattttaattctcattgccctaccatcattacgaatcctctacataatggacgagatcaataacccttccttgaccgtaaaaactataggacatcagtgatactgaagctatgagtacacagactacgaagacctgaactttgactcatatatgatccccacacaagaactaaagcccggagaactacgactgctagaagtagacaatcgagtagtcctcccaatagaaataacaatccgcatactaatctcatcagaagatgtactccactcatgagccgtaccgtccctaggactaaaaactgatgctatcccaggacgactaaaccaaacaaccctaataaccatacgaccaggactgtactacggtcaatgctcagaaatctgtggttcaaaccacagcttcatacctattgtcctcgaattggtcccactatcccacttcgagaaatgatctacctcaatgctttaatcattaagaagctatatagcattaaccttttaagttaaagactgagagtcctctaatctctccttaatgaaatgccacagttagatacatcaacttgactcattataatcttatccataatcctaactttattcatcacgtttcaactaaaagtctctaaacactacttcccaacaaacccagaaccaaaacacacgccgctattaaaaaacagtgcgccctgagaagaaaaatgaacgaaaatctattcgcctctttcgctacccctacaataataggtcttcctatcgtaatcctaattgtcctattcccaagcatcctatttccatctcctgaccgactaatcaataatcgcctcgcctcaattcaacaatgattaatccaactaacatcaaaacaaatgttatcaatccataaccgtaaaggacagacatgagcactcatacttatttcacttattctatttattggatccactaacctgctaggcctcctaccacactcattcacccctaccacccaactatccataaacctaggaatggctatccccctatgagcaggaacagtcatcacaggttttcgacacaaaacaaaagcatccctagcccacttcctaccccaaggaacacctctacccctcattccaatactagtgatcatcgaaactattagcctatttattcaacccatagctttagccgtacgactgacggctaatattactgcaggtcacctactaattcacctaatcggaggagctaccctcgcccttatagacattagcaccgccacagcattcattactttcactatccttatcctactcactatccttgaatttgctgtagccctcattcaagcctatgtcttcacactgctagtaagcttatatctacatgacaatacctaatgacccaccaaacccatgcataccatatagtcaaccccagcccatgacccctaacaggagccctttcagcccttctcataacatccggcctaatcatgtgattccactttaactcaatatacctactaatgctaggcctcactaccaacaccctgactatataccaatgatgacgagatattgtccgagaaagtacattccaaggtcaccatactccaatcgtccaaaaaggcttgcgatatggtatgatcctcttcatcgtatcagaagtgttcttcttcgccggtttcttctgagccttttaccactccagcctagcacccacccccgagctgggaggatgctgaccacccacaggtattacccctctaaaccctatagaagtcccacttctaaatacttctgtccttttagcctcaggagtatcaattacctgagctcaccatagcctaatagaaggaaaccgcaagcacatacttcaagcactattcattaccatctccctaggcatttacttcacattattacaagcctcagaatactatgaaactcctttcacaatttccgatggaatctatggttctaccttcttcatggcaacaggattccatggactgcacgtaatcatcggctcaactttcttaattgtatgcttcgtacgacagctaaaatttcacttcacatctaaccaccatttcggctttgaagccgccgcctgatactgacatttcgtggacgtagtatgactgttcctatacgtatctatctattgatgaggatcttgcttccttagtataattagtatagttgacttccaatcaaccagctctggttaaatccagaaagaagcaataaacatagcactaaccctatttaccaacacagccctggcctctctactcgtactaattgcattctgactccctcagctaaatacatactcagaaaaagccagcccctacgaatgtggatttgaccccataggatcagcacgcctacccttctccataaaattctttctagtagccatcacatttctactattcgacctagaaattgccctactccttccacttccatgagcatcgcacacagataacctaaccaccatacttaccatagcactactactcatctctcttctagccgcaagcctggcctacgaatgaactgaaaagggactagaatgaacagaatatgataattagtttaacccaaaacaaatgatttcgactcattagattatgacttatatcataattatcaaatgtccatagtatatgccaacatcttcttggccttcattatatctcttataggactacttatatatcgatcccacctgatatcctccctactctgcctagaaggtatgatactatcattatttgtaataataacagtaacaatcctgaataaccattttacactagctagcatagcccccattattcttctcgtcttcgctgcttgtgaagcagccctaggactgtcactcctggtaatagtgtccaacacatacggaaccgactacgtacaaaatctgaacctcctacaatgctaaaaatcattatccccaccataatactcatacccctgacgtgaatatcaaaacctaacatgatctgaatcaacacgacagcctatagcctactaatcagccttatcagcctatccttcctaaatcaactcggtgacaattgcataagcctgtccctactattcttcacagactctctatcagctcccctgttagcactcacaacatgactgctacccctgatacttatagctagccaatttcacctatcaaaagagccactaacccggaaaaaactttatattacaatactaatcctactacaactattcctaatcataacatttaccgctacagaattaatcatattttacattttatttgaagcaaccctagtacctactctaattattattacccgatggggaaaccagacagaacgcctaaatgcaggaacgtacttcctattttacactctagtaggatccttgcccctgctagtagccctactattcatccaaaacaatataggtacattaaacttcctaataatccaactctgagcccaacccctaccaagctcctgatctaacaccctcctatgactagcatgtatgatggcattcatggtaaaaatacccctatacggcctccacctatgactgcccaaagcccacgtagaagcacccatcgctgggtccatagtactagccgcagtgctcctaaaactagggggctatggcatgatacgaattacagtacttctaagcccactaacaaacttcatggcataccccttcataatactatcattatgaggcataatcataactagctccatctgcttacgccaaacagacctaaaatccctaattgcatattcctccgtaagccacatagccctagtcatcatagcaattctcatccaaacgccatgaagttacatgggagcaacagccctaataatcgcccacggtttaacatcatccatactgttctgcctagccaactccaactacgaacgcacccatagtcgaactataattctcgcacgcggactgcaagtgctccttcccttaatagcagcctgatggctattggcaagtcttaccaacctggcacttccacccaccatcaatctaattggagagctattcgtagtaatagcctcattttcatgatccaacattactattatcctaataggaaccaacatcatcattaccgccctatactcactatacatactaactaccacacaacgcggcaaatatacctatcacatcaaaaacatcaaaccctcattcacacgagaaaacgccctaataacgctacacctaatgcccctactactactatcactcaaccccaaaatcattctaggacctatctactgtaaatatagtctaaaaaagatattagattgtgaatctaatgacaaaagctcgaacctttttatttaccgaaaaagaatgcaagaactgctaattcatgcccccacgtataaaaacgtggctttttcaacttttaaaggatagaagtaatccattggtcttaggaaccaaaaaattggtgcaactccaaataaaagtaattaacttattcgcttcctctatcatcacaacactatccatactcacactcccaatcgtcttgaccagcacgtcaatctacaaaaacaagctctacccacaatatgtaaaaaccaccatttcatacgccttcataatcagcatgatccccacaacaatattcatctattcagggcaggagataattatctcaaactgacactgaataacaattcaaaccataaaactcacacttagctttaaactagaccatttttccataattttcgtacctgtggcccttttcgttacatgatccattatagagttttcaatatgatacatacactcagatcctttcatcaaccgattcttcaaatacctactaatatttctcatcaccatgatgattttagttaccgcaaacaacctattccaactattcatcggctgagaaggagtgggtatcatatcatttcttctcatcgggtggtgacatggacgaaccgacgcaaatacagccgccctccaggcagtcctctataatcgcattggagatgtgggttttatcatagccatagcatgattcttaatcaacctaaacacatgggaacttcaacagatctttatttcccaccacaacaacctaaatataccacttataggcctcctcctagcagcaactgggaaatcagctcaattcggacttcacccatgactgccttcagccatagaaggacctaccccagtatccgccctactccattctagtactatggtcgtagcaggagttttcctcctaattcgattccaccccctaatagaacacaacacgataatacaaacaaccaccctatgcctaggggctatcactactctattcacggcaatctgtgcactcacccaaaacgacatcaagaaaatcatcgcattctcgacctcaagccaactaggactcataatcgtcacaatcggtatcaaccaaccacacctggcattcctacacatctgcacccacgcattcttcaaagctatattattcatatgctccggatctatcattcacaacctaaacgatgagcaagatatccgaaaaatgggaggtttatataaagtactaccattcaccactacctcattaattgtaggaagcttagcgcttacaggaatgcccttcctcacaggattctactccaaagacctaattatcgaaaccgccaacacgtcgtataccaacgcctgagccctattactgactctcgtcgccacatccataacagcagcctacagcactcgaattatattcttcacactcctagggcaacctcgatttaaccccataatcacaatcaacgagaacagcccactcctaattaattccattaaacgcctactactaggaagcatttttgcagggtacttaatctcctacaacatcacacccacctccactccacaaataaccatgccctattacctaaaactgacagccttgaccgtaacacttctaggcttcatcctagcactggaactgaacctcacttcacaaagccttaaactcaaatacccatcaaacctattcaaattctctagcctcctcggatacttccccactatcatccaccgttacataccgatagtaaacttatcagcgagccaaaaactagcctcaacactactagatgcaatctgactagagagtgcattaccaaaatccatctcttactttcacataaaatcatcagtcactatctccaaccagaagggcctaatcaaactatacttcctctccttcatcatcaccttaatcctagccctaataataattaattcccacgagtaacctccatgatcaccagtactccagtaagaagggatcacccagtcacaataactaaccaagtaccataactatacagggctgcaatacccatagcctcctcactgaaaaacccagaatcccctgtatcataaatcacccaatcacccataccattaaactcaaatacaacatcaacctcatcatcctttaaaatataacaagcaagcaatagctctgacaacagacccataacaaacgcacccaacacagccttattagagacccagacttcaggatactgctcaatagccatagcagtcgtatagccaaaaacaacaagcatgcctcccaagtaaatcaaaaaaactattagacctaaaaaagaccctccaaaactcaacacaataccgcaaccaacagctccactaataatcaaaacaagcccaccataaatgggagaaggcttagaagaaaatcccacaaaactaacaacaaaaataatacttaaaataaacacaatatatgtcatcattattcccacatggaatctaaccatgaccaatgacatgaaaagccatcgttgtaattcaactacgagaacactaatgaccaacatccgaaaaacccatccactaataaaaattatcaacaactcattcatcgacctacccacaccatcaaatatctcggcatgatgaaactttggatctcttctcggaatctgcctaatcctgcagatcttaacaggcttattcctagccatacactacacctcagacacaaccacagccttctcatcagtaacccacatctgccgagacgtaaactacggctgaatcatccgttatcttcacgcaaatggagcttccatatttttcatctgcctatacatgcatgtaggacgaggactgtattacggctcctacacattcacagagacatgaaacatcggcattatcctcttattcaccgtcatagctacagcattcatgggctacgtcctaccatgaggacaaatatcattttgaggagcaacagtcattaccaatctactatcagcaatcccctatgtcggaaccgaccttgtacaatgaatctgaggaggattttcagtagataaagcaaccttaacacgattcttcgccttccacttcatcctaccattcgtagtattagcactagacgcagtccacctactattcctacacgaaacaggatcaaacaacccctccggaatcatatccgactcagacaaaatcccattccacccgtactatacaattaaagatatcctaggggccctacttctcattctagtcctaacactactagtgctattctcacccgacctgttaggagacccagacaactatatccctccgaatcccctaagcaccccaccacatatcaaacccgaatggtacttcctatttgcctacgcaatcttacgatccatccccaacaaactaggaggagtactagccctagtactctccattcttgtcctcgctatcatacccctactccacacatcaaaacaacgaggaataatattccgacccatcagccaatgcctattctgattcctagtagcagacctactcacactaacatgaatcggaggacaaccagtcgaacacccttatatcaccgttggtcaactagcctcaatcctatactttacaatcctcctagtactcatacccattgccagcatcatcgaaaataacattctaaaatgaagagtctttgtagtatactatattaccttggtcttgtaaaccaaaaatggaggacacaactctccctaagactcaaggaagaggtaaacaaccccaccaccagcacccaaagctgacattctaattaaactattccctgacacccacccaatccccccttcactcctcaattcatataatagtaccaccttactgtgctatcacagtattcacgcacctggcttatgtacttcgtgcattgcatgcccccccccatcctcggaccccctatgtatatcgtgcattaatggtttgccccatgcatataagcatgtacatgaagtggttgattttacatatatggcatataattgtaacaccaagttctaaagcataattacctgttatgaacgcatttcacctagtccacgagccttaatcaccatgcctcgggaaatcagcaacccttgtgaaacgtgtacctagatctcgctccgggcccataacatgtgggggtttctatactggaactatacctggcatctggttcttacttcagggccatgaaatctctagaattcaatcctactaacccttcaaatgggacatctcgatgg
data/examples/genes/horse.txt ADDED
@@ -0,0 +1 @@
1
+ gttaatgtagcttaataatataaagcaaggcactgaaaatgcctagatgagtattcttactccataaacacataggcttggtcctagcctttttattagttattaatagaattacacatgcaagtatccgcaccccagtgagaatgccctctaaatcacgtctctacgattaaaaggagcaggtatcaagcacactagaaagtagctcataacaccttgctcagccacacccccacgggacacagcagtgataaaaattaagctatgaacgaaagttcgactaagtcatattaaataagggttggtaaatttcgtgccagccaccgcggtcatacgattaacccaaattaataaatctccggcgtaaagcgtgtcaaagactaataccaaaataaagttaaaacccagttaagccgtaaaaagctacaaccaaagtaaaatagactacgaaagtgactttaatacctctgactacacgatagctaagacccaaactgggattagataccccactatgcttagccctaaactaaaatagcttaccacaacaaagctattcgccagagtactactagcaacagcctaaaactcaaaggacttggcggtgctttacatccctctagaggagcctgttccataatcgataaaccccgataaaccccaccatcccttgctaattcagcctatataccgccatcttcagcaaaccctaaacaaggtaccgaagtaagcacaaatatccaacataaaaacgttaggtcaaggtgtagcccatgggatggagagaaatgggctacattttctaccctaagaacaagaactttaacccggacgaaagtctccatgaaactggagactaaaggaggatttagcagtaaattaagaatagagagcttaattgaatcaggccatgaagcgcgcacacaccgcccgtcaccctccttaaatatcacaaatcataacataacataaaaccgtgacccaaacatatgaaaggagacaagtcgtaacaaggtaagtataccggaaggtgtacttggataaccaaagtgtagcttaaacaaagcatccagcttacacctagaagatttcactcaaaatgaacactttgaactaaagctagcccaaacaatacctaattcaattacccttagtcacttaactaaaacattcaccaaaccattaaagtataggagatagaaattttaacttggcgctatagagaaagtaccgtaagggaacgatgaaagatgcattaaaagtactaaacagcaaagcttaccccttttaccttttgcataatgatttaactagaataaacttagcaaagagaacttaagctaagcaccccgaaaccagacgagctacctatgaacagttacaaatgaaccaactcatctatgtcgcaaaatagtgagaagattcgtaggtagaggtgaaaagcccaacgagcctggtgatagctggttgtccagaaacagaatttcagttcaaatttaaatttacctaaaaactactcaattctaatgtaaatttaaattatagtctaaaaaggtacagctttttagatacaggttacaaccttcattagagagtaagaacaagataaacccatagttggcttaaaagcagccatcaattaagaaagcgttcaagctcaacgacacatctatcttaatcccaacaatcaacccaaactaactcctaatctcatactggactattctatcaacacatagaagcaataatgttaatatgagtaacaagaattatttctccttgcataagcttatatcagaacgaatactcactgatagttaacaacaagatagggataatccaaaaactaatcatctatttaaaccattgttaacccaacacaggcatgcatctataaggaaagattaaaagaagtaaaaggaactcggcaaacacaaaccccgcctgtttaccaaaaacatcacctctagcatttccagtattagaggcactgcctgcccagtgacatctgtttaaacggccgcggtatcctaaccgtgcaaaggtagcataatcacttgttccctaaatagggacttgtatgaatggccacacgagggttttactgtctcttacttccaatcagtgaaattgaccttcccgtgaagaggcgggaatgactaaataagacgagaagaccctatggagctttaattaactgattcacaaaaaacaacacacaaaccttaaccttcagggacaacaaaacttttgattgaatcagcaatttcggttggggtgacctcggagaacaaaacaacctccgagtgatttaaatccagactaaccagtcaaaatatataatcacttattgatccaaaccattgatcaacggaacaagttaccctagggataacagcgcaatcctattccagagtccatatcgacaattagggtttacgacctcgatgttggatcaagacatcctaatggtgcaaccgctattaagggttcgtttgttcaacgattaaagtcttacgtgatctgagttcagaccggagtaatccaggtcggtttctatctattctatacttttcccagtacgaaaggacaagaaaagtagggcccactttacaagaagcgccctcaaactaatagatgacataatctaaatctaactaatttataacttctaccgccctagaacagggctcgttagggtggcagagcccggaaattgcataaaacttaaacctttacactcagaggttcaactcctctccctaacaacatgttcataattaacgtcctcctcctaattgtcccaatcttgctcgccgtagcattcctcacactagttgaacgaaaagtcttaggctatatgcaacttcgcaaaggacccaacatcgtaggcccctatggcctactacaacctattgccgatgccctcaaactatttatcaaagagccactacaaccactaacatcatcgacatccatattcatcatcgcaccaatcctagccctaaccctggccttaaccatatgaatccctctgcccataccatacccactaatcaacataaacctaggaattctattcatactagccatgtccagcctagctgtctactcaatcctttgatcaggatgggcctcaaactcaaaatacgccctaattggagctctacgagcagtagcacaaaccatctcatacgaagtaactctagcaatcatcctactctcagtcctcctaataagcggatcattcacattatcaacacttattattacccaagaatacctctgattaatcttcccatcatgacccttagccataatgtgattcatctcaacattagccgaaaccaaccgagctccatttgacctaacagaaggagaatcagaactcgtctctggattcaacgttgaatacgcagccggcccatttgctctattcttcctagcagaatacgcaaacatcatcatgataaacatcttcacaacaaccctatttctaggagcatttcacaacccctacctgccagaactctactcaattaatttcaccattaaagctctccttctaacatgttccttcctatgaatccgagcatcctacccacgattccgatatgaccaacttatacacctcctatgaaagaacttcctaccactcacactagccctctgcatatgacacgtctcacttccaatcatactatccagcatcccaccacaaacataggaaatatgtctgacaaaagagttactttgatagagtaaaacatagaggctcaaaccctcttatttctagaactacaggaattgaacctgctcctgagaattcaaaatcctccgtgctaccgaattacaccatgtcctacaagtaaggtcagctaaataagctatcgggcccataccccgaaaatgttggattacacccttcccgtactaataaatccccttatcttcacaactattctaataacagttcttctaggaactataatcgttataataagctcacactgactaataatctgaatcggatttgaaataaatctactagccattatccctatcctaataaaaaagtacaatccccgaaccatagaagcctccaccaaatattttctaacccaagccaccgcatcaatactcctcataatagcgatcatcattaacctcatacactcaggccaatgaacaatcacaaaagtcttcaaccccacagcgtccatcattataacttcagctctcgccataaaacttggactcacaccattccacttctgagtacccgaagtcacacagggcatctcattaacatcaggtctcatcctacttacatgacaaaaactagccccaatatcaatcctatatcaaatctcaccctcaattaacctaaatatcttattaactatagccgtactgtcaatcctagtaggaggctgaggcggtctcaaccaaacccaactacgaaaaatcatagcatactcgtcaatcgcgcatataggatgaataacagctgtcctagtatataacccaacactaacaatactaaacatattaatttacattataataacactcacaatattcatactatttatccacagctcctctactacaacactatcactctcccacacatgaaacaaaatacctctaaccactacactaatcttaattaccttactatccataggaggcctccccccactatcaggattcatacccaaatgaataatcattcaagagctcaccaaaaatagcagcatcatcctccccacactaatagccattatagcactactcaacctctacttctacatacgactaacctattccacctcactgaccatattcccatccacaaacaacataaaaataaaatgacaattcgaaaccaaacgaattactctcttacccccgttaattgttatatcctccctactcctccccctaacccccatactatcaattttggactaggaatttaggttaacatcccagaccaagagccttcaaagctctaagcaagtgaatccacttaattcctgcatactaaggactgcgagactctatctcacatcaattgaacgcaaatcaaactcttttattaagctaagcccttactagattggtgggctaccatcccacgaaattttagttaacagctaaataccctaatcaactggcttcaatctacttctcccgccgcctagaaaaaaaggcgggagaagccccggcagaaattgaagctgctcctttgaatttgcaattcaatgtgaaaattcaccacgggacttgataagaagaggattccaacccctgtctttagatttacagtctaatgcttactcagccatcttacctatgttcatcaaccgctgactattttcaactaaccacaaagacatcggcactctgtacctcctattcggcgcttgagctggaatagtaggaactgccctaagcctcctaatccgtgctgaattaggccaacctgggaccctactaggagatgatcagatctacaatgtcattgtaaccgcccatgcattcgtaataattttctttatggtcatacccattataatcggaggattcggaaactgattagtccccctgataattggagcacctgatatagctttcccccgaataaacaacataagcttctgattacttcccccatcattcctacttcttctcgcttcctcaataattgaagcaggtgccggaacaggctgaaccgtatatcctcctctagctggaaatctggcgcatgcaggagcctctgttgacttaaccattttctctctccacctagctggggtgtcctcgattttaggtgccatcaactttattaccacaatcattaacataaaaccaccagccctatcccaatatcaaacccccctattcgtttgatctgtccttattacggcagtactccttctcctagccctcccggtcctagcagcaggcattaccatgcttctcacagaccgtaacctgaacactactttcttcgaccccgcaggaggaggggatccaatcctttatcaacacctattctgattcttcggacaccccgaagtctatattcttatcctaccaggcttcggtataatctcacacatcgtcacatactactcaggtaaaaaggaaccttttggctacatgggtatagtgtgagctataatatccattggctttctaggcttcatcgtatgggctcaccacatgtttacagtagggatagacgttgacacacgagcatacttcacatcagctaccataatcatcgctatccctactggtgtaaaagtattcagctgactagccaccctgcacggaggaaatatcaaatgatctccagctatactctgagctctaggcttcatcttcttattcacagtaggaggtctaacaggaatcgtcctagctaactcatccctagatattgttctccacgatacttattatgtagtagcacatttccattatgtcctgtctataggagcagtcttcgccattatggggggatttgtacactgattccctctattctcaggatacacactcaaccaaacctgagcaaaaatccactttacaattatattcgtaggggtaaatataaccttcttcccacaacatttccttggcctctcaggaatgccacgacgctattctgattatccagacgcatatacaacatgaaataccatctcatccataggatcttttatctcacttacagcagtgatactaataattttcataatttgagaagcgttcgcatccaaacgagaagtgtctacagtagaattaacctcaactaatctggaatgactacacggatgccccccaccataccacacatttgaagaacccacctacgtaaacctaaaataagaaaggaaggaatcgaaccccctctaactggtttcaagccaatatcataaccactatgtctttctccatcaattgaggtattagtaaaaattacatgactttgtcaaagttaaattataggttaaacccctatatacctctatggcctaccccttccaactaggattccaagacgcaacatcccctattatagaagaactcctacacttccacgaccacacactaataatcgtattcctaattagctctctagtattatatattatctcatcaatactaacaactaaattaacccataccagcaccatagatgctcaagaagtagagacaatttgaacgattttaccagccatcatccttattctaatcgccctcccatccctacgaattctatatataatagatgaaatcaataatccgtccctcacagtcaaaacaataggccaccaatgatactgaagctacgagtataccgattacgaagacttgacctttgactcctacatgatccccacatcagacctaaaaccaggagaattacgtcttctagaagtcgacaatcgagtggttctccccatagaaataaccatccgaatgctaatttcatccgaagacgtcctacactcatgagctgtgccctccctaggcctaaaaacagacgctatccctgggcgcctaaatcagacaactctcgtggcctctcgaccaggactttactacggtcaatgctcagagatctgcggatcaaaccacagctttataccaattgtccttgaactagttccactgaaacacttcgaagaatgatctgcatcaatattataaagtcactaagaagctattatagcattaaccttttaagttaaagattgagggttcaaccccctccctagtgatatgccacagttggatacatcaacatgatttattaatatcgtctcaataatcctaactctatttattgtatttcaactaaaaatctcaaagcactcctatccgacacacccagaagtaaagacaaccaaaataacaaaacactctgccccttgagaatcaaaatgaacgaaaatctattcgcctctttcgctaccccaacaatagtaggcctccctattgtaattctgatcatcatatttcccagcatcctattcccctcacccaaccgactaatcaacaatcgcctaatctcaattcaacaatggctagtccaacttacatcaaaacaaataatagctatccataacagcaaaggacaaacctgaactcttatactcatatcactgatcctattcattggctcaacaaacttattaggcctactacctcactcatttacaccaacaacacaactatcaataaacctaggcatagctattcccctatgggcagggacagtattcataggctttcgtcacaaaacaaaagcagccctagcccactttctacctcaagggacgcccattttcctcatccccatactagtaattatcgagactatcagcctatttattcaacctgtagccctagccgtgcggctaaccgctaacattaccgccggacacctcctaatacacctcatcggaggggcaacactagccctcataagcatcagcccctcaacagcccttattacgtttatcatcctaattctactaactatcctcgaattcgcagtagctataatccaagcctacgtattcactctcctggtaagcctttacttacacgacaacacctaatgacccaccaaacccacgcttaccacatagtaaaccccagcccatgaccacttacaggagccctatcagccctcctgataacatcaggactagccatgtgatttcactttaactcaaccttacttctagctatagggctattaactaacatccttaccatatatcaatgatgacgagacatcatccgagaaagcacattccaaggccatcacacatcaatcgttcaaaagggactccgatatggcataatcctttttattatctcagaagtcttcttcttctctggcttcttctgagccttttaccactcaagcctagcccccacacccgaactaggcggctgctgaccacccacaggtatccaccccttaaaccccctagaagtccccttactcaacacctcagtgctcctagcatctggagtctctatcacctgagcccaccatagcctaatagaaggaaaccgtaaaaatatgctccaaggcctattcatcacaatttcactaggcgtatacttcacccttctccaagcctcagaatactatgaagcctcatttactatttcagatggagtatacggatcaacatttttcgtagcaacagggttccacggactacacgtaattatcggatctaccttcctcattgtatgtttcctacgccaactaaaattccactttacatccagccaccacttcggattcgaagcagccgcttgatactgacacttcgtcgacgtagtctgactattcttgtacgtctctatttattgatgaggatcctattcttttagtattgaccagtacaattgacttccaatcaatcagcttcggtataacccgaaaaagaataataaacctcatactgacactcctcactaacacattactagcctcgctactcgtactcatcgcattctgactaccacaactaaacatctatgcagaaaaaaccagcccatatgaatgcggatttgaccctatagggtcagcacgcctccccttctcaataaaatttttcttagtggccattacatttctgctattcgacttagaaattgccctcctattaccccttccatgagcatcccaaacaactaacctaaacactatacttatcatagcactagtcctaatctctcttctagccatcagcctagcctacgaatgaacccaaaaaggactagaatgaactgagtatggtaattagtttaaaccaaaacaaatgatttcgactcattaaactatgattaacttcataattaccaacatgtcactagtccatattaatatcttcctagcattcacagtatccctcgtaggcctactaatgtaccgatcccacctaatatcctcactcctatgcctagaaggaataatactatcactattcgtcatagcaaccataatagtcctaaacacccacttcacactagctagtataatacctatcatcttactagtatttgctgcctgcgaacgagctctaggattatccctactagtcatagtctccaatacttatggagtagaccacgtacaaaaccttaacctcctccaatgctaaaaattatcattcccacaatcatacttatgccccttacatgactatcaaaaaagaatataatctgaatcaacactacaacctatagtctattaatcagccttatcagcctatccctcctaaaccaacctagcaacaatagcctaaacttctcactaatattcttctccgatcccctatcagccccacttctggtgttgacaacatgactactgccactaatactcatagccagccaacaccatctatctaaggaaccactaatccgaaaaaaactctacatcaccatgctaaccatacttcaaactttcctaatcatgacttttaccgccacagaactaatctccttctacatcctatttgaagccacattagttccaacactaattatcatcacccgctgaggcaaccaaacagaacgcctgaacgcaggcctctacttcctattctacacactaataggttccctcccactcttagttgcactaatctctatccaaaacctaacaggctcactaaacttcctattaattcaatactgaaaccaagcactacccgactcttgatccaatattttcctatgactagcatgtataatagcattcatagtcaaaataccggtatatggtcttcacctctgactcccaaaagcccatgtagaagccccaattgccggatccatagtgctagcagccattctactaaaactaggaggctacggaatactacgaattacaacaatactaaacccccaaactagctttatagcctaccccttcctcatactatccctgtgaggaataatcataactagttccatctgcttgcgacaaaccgatctaaaatcacttattgcatactcctctgtcagccacatagccctagtaatcgtagccgtcctcatccaaacaccatgaagttatataggagctacagccctaataatcgctcacggccttacatcatcaatactattctgcctggcaaactcaaattacgaacgtacccatagccgaactataatcctagcccgcgggcttcaaacacttcttccccttatagcagcctgatgactattagccagcctaaccaacctggccctccctcccagcattaacctaattggagagctattcgtagtaatatcatcattctcatgatcaaatattaccattatcctaataggagccaatatcaccatcaccgccctctactccctatacatactaatcacaacacaacgagggaaatacacacaccatatcaacagcattaaaccttcatttacacgagaaaacgcactcatggccctccacatgactcccctactactcctatcacttaaccctaaaattatcctaggctttacgtactgtaaatatagtttaacaaaaacactagattgtggatctagaaacagaaacttaatatttcttatttaccgagaaagtatgcaagaactgctaattcatgcccccatgtccaacaaacatggctctctcaaacttttaaaggataggagctatccgttggtcttaggaaccaaaaaattggtgcaactccaaataaaagtaatcaacatgttctcctccctcatactagtttcactattagtactaaccctcccaatcatattatcaatcttcaatacctacaaaaacagcacgttcccgcatcatgtaaaaaacactatctcatatgccttcattactagcctaattcccactataatatttattcactctggacaagaaacaattatctcaaactgacactgaataaccatacaaaccctcaaactatccctaagcttcaaactagattacttctcaataattttcgtaccagtagccctattcgtaacatgatctattatggaattctccctatgatacatgcactcagatccttacattactcgattttttaaatacttacttacattcctcatcactataataattctagtcacagctaacaaccttttccaactgttcatcggatgggagggagtaggcatcatgtcattcttactaatcggatgatgatacggccgaacagatgccaacaccgcggcccttcaagcaatcctttataaccgcatcggggatatcggcttcatcatggccatagcctgattcctattcaacaccaacacatgagacctccaacaaatcttcatactcgaccccaaccttaccaacctcccgctcctaggcctcctcctagccgcaactggcaaatccgctcaatttggactccacccatgacttccttcagccatagagggccctacaccagtctcagccctactccactccagcacaatagttgtagcaggcgtcttcctgctaatccgcttccatccactaatagaaaacaacaaaacaatccagtcacttaccctatgcctaggagccatcaccacactattcacagcaatctgcgcactcactcaaaacgatatcaaaaaaatcattgctttctccacctccagccaactaggcctgataatcgtaaccatcggtatcaatcaaccctacctagcattcctccacatttgcactcacgcattcttcaaagctatactatttatatgttccggatccattatccacagcctaaatgacgagcaagatatccgaaaaataggcggactatttaatgcaatacccttcaccaccacatctctaattattggcagccttgcactcaccggaattcctttcctcacaggcttctactccaaagacctcatcatcgaaaccgccaacacatcgtacaccaacgcctgagccctactaataactctcattgccacatccctcacagctgtctacagtacccgaatcatcttctttgcactcctagggcaaccccgcttcctccctctgacctcaatcaacgaaaataacccctttctaattaactccatcaaacgcctcttaattggcagcatttttgccggattcttcatctccaacaatatctaccccacaaccgtcccagaaataaccatacctacttacataaaactcaccgccctcgcagtaaccatcctaggatttacactagccctagaactaagcttgataacccataacttaaaactagaacactccaccaacgtattcaaattctccaacctcctaggatactacccaacaattatacaccgactcccaccgctcgctaacctatcaataagccaaaaatcagcatcacttctactagactcaatctgactagaaaacatcctgccaaaatctatctcccagttccaaataaaaacctcgatcctaatttccacccaaaaaggacaaatcaaattatatttcctctcattcctcatcacccttaccctaagcatactactttttaatctccacgagtaacctctaaaattaccaagaccccaacaagcaacgatcaaccagtcacaatcacaacccaagccccataactatacaatgcagcagcccctataatttcctcactaaacgccccagaatctccagtatcataaatagctcaagcccccacaccactaaacttaaacactacccccacttcctcactcttcagaacatataaaaccaacataacctccatcaacaaccctaaaagaaatacccccataacagtcgtattagacacccatacctcaggatactgctcagtagccatagccgttgtataaccaaaaacaaccaacattcctcccaaataaatcaaaaacaccatcaaccccaaaaaggaccctccaaaattcataataataccacaacctacccctccacttacaatcagcactaaacccccataaataggtgaaggttttgaagaaaaccccacaaaactaacaacaaaaataacactcaaaataaacacaatatatgtcatcattattcccacgtggaatctaaccacgaccaatgacatgaaaaatcatcgttgtatttcaactataagaacaccaatgacaaacatccggaaatctcacccactaattaaaatcatcaatcactcttttattgacctaccagccccctcaaacatttcatcatgatgaaacttcggctccctcctaggaatctgcctaatcctccaaatcttaacaggcctattcctagccatacactacacatcagacacgacaactgccttctcatccgtcactcacatctgccgagacgttaactacggatgaattattcgctacctccatgccaacggagcatcaatattttttatctgcctcttcattcacgtaggacgcggcctctactacggctcttacacattcctagagacatgaaacattggaatcatcctacttttcacagttatagctacagcattcatgggctatgtcctaccatgaggccaaatatccttttgaggagcaacagtcatcacgaacctcctatcagcaattccctacatcggtactaccctcgtcgagtgaatctgaggtggattctcagtagacaaagccacccttacccgattttttgctttccacttcatcctacccttcatcatcacagccctggtagtcgtacatttactatttcttcacgaaacaggatctaataacccctcaggaatcccatccgatatggacaaaatcccattccacccatattatacaattaaagacatcctaggactcctcctcctgatcttgctcctactaactctagtattattctcccccgacctcctaggagacccagacaactacaccccagctaaccctctcagcactccccctcatattaaaccagaatggtacttcctgtttgcctacgccatcctacgctccattcccaacaaactaggcggcgtattagccctaatcctctccatcctgatcctagcactcatccccaccctccacatatcaaaacaacgaagcataatattccggcctctcagccaatgcgtattctgactcttagtggcagacttactgacactaacatgaatcggcggacagccagtggaacacccatacgtaattatcggccaactggcctcaatcctctacttctccctaattctcatttttataccactcgcaagcaccatcgaaaacaatcttctaaaatgaagagtccctgtagtatatcgcacattaccctggtcttgtaaaccagaaaagggggaaaacgtttcctcccaaggactatcaaggaagaagctctagctccaccatcaacacccaaagctgaaattctacttaaactattccttgatttcttcccctaaacgacaacaatttaccctcatgtgctatgtcagtatcagattatacccccacataacaccatacccacctgacatgcaatatcttatgaatggcctatgtacgtcgtgcattaaattgtctgccccatgaataataagcatgtacataatatcatttatcttacataagtacattatattattgatcgtgcataccccatccaagtcaaatcatttccagtcaacacgcatatcacagcccatgttccacgagcttaatcaccaagccgcgggaaatcagcaaccctcccaactacgtgtcccaatcctcgctccgggcccatccaaacgtgggggtttctacaatgaaactatacctggcatctggttctttcttcagggccattcccacccaacctcgcccattctttccccttaaataagacatctcgatggactaatgactaatcagcccatgctcacacataactgtgatttcatgcatttggtatctttttatatttggggatgctatgactcagctatggccgtcaaaggcctcgacgcagtcaattaaattgaagctggacttaaattgaacgttattcctccgcatcagcaaccataaggtgttattcagtccatggtagcgggacataggaaacaagtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctacccgcgcagtaagcaagtaatatagctttcttaatcaaaccccccctaccccccattaaactccacatatgtacattcaacacaatcttgccaaaccccaaaaacaagactaaacaatgcacaatacttcatgaagcttaaccctcgcatgccaaccataataactcaacacacctaacaatcttaacagaactttccccccgccattaataccaacatgctactttaatcaataaaatttccatagacaggcatccccctagatctaattttctaaatctgtcaacccttcttccccc
data/examples/genes/human.txt ADDED
@@ -0,0 +1 @@
1
+ gatcacaggtctatcaccctattaaccactcacgggagctctccatgcatttggtattttcgtctggggggtatgcacgcgatagcattgcgagacgctggagccggagcaccctatgtcgcagtatctgtctttgattcctgcctcatcctattatttatcgcacctacgttcaatattacaggcgaacatacttactaaagtgtgttaattaattaatgcttgtaggacataataataacaattgaatgtctgcacagccactttccacacagacatcataacaaaaaatttccaccaaaccccccctcccccgcttctggccacagcacttaaacacatctctgccaaaccccaaaaacaaagaaccctaacaccagcctaaccagatttcaaattttatcttttggcggtatgcacttttaacagtcaccccccaactaacacattattttcccctcccactcccatactactaatctcatcaatacaacccccgcccatcctacccagcacacacacaccgctgctaaccccataccccgaaccaaccaaaccccaaagacaccccccacagtttatgtagcttacctcctcaaagcaatacactgaaaatgtttagacgggctcacatcaccccataaacaaataggtttggtcctagcctttctattagctcttagtaagattacacatgcaagcatccccgttccagtgagttcaccctctaaatcaccacgatcaaaaggaacaagcatcaagcacgcagcaatgcagctcaaaacgcttagcctagccacacccccacgggaaacagcagtgattaacctttagcaataaacgaaagtttaactaagctatactaaccccagggttggtcaatttcgtgccagccaccgcggtcacacgattaacccaagtcaatagaagccggcgtaaagagtgttttagatcaccccctccccaataaagctaaaactcacctgagttgtaaaaaactccagttgacacaaaatagactacgaaagtggctttaacatatctgaacacacaatagctaagacccaaactgggattagataccccactatgcttagccctaaacctcaacagttaaatcaacaaaactgctcgccagaacactacgagccacagcttaaaactcaaaggacctggcggtgcttcatatccctctagaggagcctgttctgtaatcgataaaccccgatcaacctcaccacctcttgctcagcctatataccgccatcttcagcaaaccctgatgaaggctacaaagtaagcgcaagtacccacgtaaagacgttaggtcaaggtgtagcccatgaggtggcaagaaatgggctacattttctaccccagaaaactacgatagcccttatgaaacttaagggtcgaaggtggatttagcagtaaactaagagtagagtgcttagttgaacagggccctgaagcgcgtacacaccgcccgtcaccctcctcaagtatacttcaaaggacatttaactaaaacccctacgcatttatatagaggagacaagtcgtaacatggtaagtgtactggaaagtgcacttggacgaaccagagtgtagcttaacacaaagcacccaacttacacttaggagatttcaacttaacttgaccgctctgagctaaacctagccccaaacccactccaccttactaccagacaaccttagccaaaccatttacccaaataaagtataggcgatagaaattgaaacctggcgcaatagatatagtaccgcaagggaaagatgaaaaattataaccaagcataatatagcaaggactaacccctataccttctgcataatgaattaactagaaataactttgcaaggagagccaaagctaagacccccgaaaccagacgagctacctaagaacagctaaaagagcacacccgtctatgtagcaaaatagtgggaagatttataggtagaggcgacaaacctaccgagcctggtgatagctggttgtccaagatagaatcttagttcaactttaaatttgcccacagaaccctctaaatccccttgtaaatttaactgttagtccaaagaggaacagctctttggacactaggaaaaaaccttgtagagagagtaaaaaatttaacacccatagtaggcctaaaagcagccaccaattaagaaagcgttcaagctcaacacccactacctaaaaaatcccaaacatataactgaactcctcacacccaattggaccaatctatcaccctatagaagaactaatgttagtataagtaacatgaaaacattctcctccgcataagcctgcgtcagattaaaacactgaactgacaattaacagcccaatatctacaatcaaccaacaagtcattattaccctcactgtcaacccaacacaggcatgctcataaggaaaggttaaaaaaagtaaaaggaactcggcaaatcttaccccgcctgtttaccaaaaacatcacctctagcatcaccagtattagaggcaccgcctgcccagtgacacatgtttaacggccgcggtaccctaaccgtgcaaaggtagcataatcacttgttccttaaatagggacctgtatgaatggctccacgagggttcagctgtctcttacttttaaccagtgaaattgacctgcccgtgaagaggcgggcataacacagcaagacgagaagaccctatggagctttaatttattaatgcaaacagtacctaacaaacccacaggtcctaaactaccaaacctgcattaaaaatttcggttggggcgacctcggagcagaacccaacctccgagcagtacatgctaagacttcaccagtcaaagcgaactactatactcaattgatccaataacttgaccaacggaacaagttaccctagggataacagcgcaatcctattctagagtccatatcaacaatagggtttacgacctcgatgttggatcaggacatcccgatggtgcagccgctattaaaggttcgtttgttcaacgattaaagtcctacgtgatctgagttcagaccggagtaatccaggtcggtttctatctaccttcaaattcctccctgtacgaaaggacaagagaaataaggcctacttcacaaagcgccttcccccgtaaatgatatcatctcaacttagtattatacccacacccacccaagaacagggtttgttaagatggcagagcccggtaatcgcataaaacttaaaactttacagtcagaggttcaattcctcttcttaacaacatacccatggccaacctcctactcctcattgtacccattctaatcgcaatggcattcctaatgcttaccgaacgaaaaattctaggctatatacaactacgcaaaggccccaacgtggtaggcccctacgggctactacaacccttcgctgacgccataaaactcttcaccaaagagcccctaaaacccgccacatctaccatcaccctctacatcaccgccccgaccttagctctcaccatcgctcttctactatgaacccccctccccatacccaaccccctggtcaacctcaacctaggcctcctatttattctagccacctctagcctagccgtttactcaatcctctgatcagggtgagcatcaaactcaaactacgccctgatcggcgcactgcgagcagtagcccaaacaatctcatatgaagtcaccctagccatcattctactatcaacattactaataagtggctcctttaacctctccacccttatcacaacacaagaacacctctgattactcctgccatcatgacccttggccataatatgatttatctccacactagcagagaccaaccgaacccccttcgaccttgccgaaggggagtccgaactagtctcaggcttcaacatcgaatacgccgcaggccccttcgccctattcttcatagccgaatacacaaacattattataataaacaccctcaccactacaatcttcctaggaacaacatatgacgcactctcccctgaactctacacaacatattttgtcaccaagaccctacttctaacctccctgttcttatgaattcgaacagcatacccccgattccgctacgaccaactcatacacctcctatgaaaaaacttcctaccactcaccctagcattacttatatgatatgtctccatacccattacaatctccagcattccccctcaaacctaagaaatatgtctgataaaagagttactttgatagagtaaataataggagcttaaacccccttatttctaggactatgagaatcgaacccatccctgagaatccaaaattctccgtgccacctatcacaccccatcctaaagtaaggtcagctaaataagctatcgggcccataccccgaaaatgttggttatacccttcccgtactaattaatcccctggcccaacccgtcatctactctaccatctttgcaggcacactcatcacagcgctaagctcgcactgattttttacctgagtaggcctagaaataaacatgctagcttttattccagttctaaccaaaaaaataaaccctcgttccacagaagctgccatcaagtatttcctcacgcaagcaaccgcatccataatccttctaatagctatcctcttcaacaatatactctccggacaatgaaccataaccaatactaccaatcaatactcatcattaataatcataatagctatagcaataaaactaggaatagccccctttcacttctgagtcccagaggttacccaaggcacccctctgacatccggcctgcttcttctcacatgacaaaaactagcccccatctcaatcatataccaaatctctccctcactaaacgtaagccttctcctcactctctcaatcttatccatcatagcaggcagttgaggtggattaaaccagacccagctacgcaaaatcttagcatactcctcaattacccacataggatgaataatagcagttctaccgtacaaccctaacataaccattcttaatttaactatttatattatcctaactactaccgcattcctactactcaacttaaactccagcaccacgaccctactactatctcgcacctgaaacaagctaacatgactaacacccttaattccatccaccctcctctccctaggaggcctgcccccgctaaccggctttttgcccaaatgggccattatcgaagaattcacaaaaaacaatagcctcatcatccccaccatcatagccaccatcaccctccttaacctctacttctacctacgcctaatctactccacctcaatcacactactccccatatctaacaacgtaaaaataaaatgacagtttgaacatacaaaacccaccccattcctccccacactcatcgcccttaccacgctactcctacctatctccccttttatactaataatcttatagaaatttaggttaaatacagaccaagagccttcaaagccctcagtaagttgcaatacttaatttctgtaacagctaaggactgcaaaaccccactctgcatcaactgaacgcaaatcagccactttaattaagctaagcccttactagaccaatgggacttaaacccacaaacacttagttaacagctaagcaccctaatcaactggcttcaatctacttctcccgccgccgggaaaaaaggcgggagaagccccggcaggtttgaagctgcttcttcgaatttgcaattcaatatgaaaatcacctcggagctggtaaaaagaggcctaacccctgtctttagatttacagtccaatgcttcactcagccattttacctcacccccactgatgttcgccgaccgttgactattctctacaaaccacaaagacattggaacactatacctattattcggcgcatgagctggagtcctaggcacagctctaagcctccttattcgagccgagctgggccagccaggcaaccttctaggtaacgaccacatctacaacgttatcgtcacagcccatgcatttgtaataatcttcttcatagtaatacccatcataatcggaggctttggcaactgactagttcccctaataatcggtgcccccgatatggcgtttccccgcataaacaacataagcttctgactcttacctccctctctcctactcctgctcgcatctgctatagtggaggccggagcaggaacaggttgaacagtctaccctcccttagcagggaactactcccaccctggagcctccgtagacctaaccatcttctccttacacctagcaggtgtctcctctatcttaggggccatcaatttcatcacaacaattatcaatataaaaccccctgccataacccaataccaaacgcccctcttcgtctgatccgtcctaatcacagcagtcctacttctcctatctctcccagtcctagctgctggcatcactatactactaacagaccgcaacctcaacaccaccttcttcgaccccgccggaggaggagaccccattctataccaacacctattctgatttttcggtcaccctgaagtttatattcttatcctaccaggcttcggaataatctcccatattgtaacttactactccggaaaaaaagaaccatttggatacataggtatggtctgagctatgatatcaattggcttcctagggtttatcgtgtgagcacaccatatatttacagtaggaatagacgtagacacacgagcatatttcacctccgctaccataatcatcgctatccccaccggcgtcaaagtatttagctgactcgccacactccacggaagcaatatgaaatgatctgctgcagtgctctgagccctaggattcatctttcttttcaccgtaggtggcctgactggcattgtattagcaaactcatcactagacatcgtactacacgacacgtactacgttgtagcccacttccactatgtcctatcaataggagctgtatttgccatcataggaggcttcattcactgatttcccctattctcaggctacaccctagaccaaacctacgccaaaatccatttcactatcatattcatcggcgtaaatctaactttcttcccacaacactttctcggcctatccggaatgccccgacgttactcggactaccccgatgcatacaccacatgaaacatcctatcatctgtaggctcattcatttctctaacagcagtaatattaataattttcatgatttgagaagccttcgcttcgaagcgaaaagtcctaatagtagaagaaccctccataaacctggagtgactatatggatgccccccaccctaccacacattcgaagaacccgtatacataaaatctagacaaaaaaggaaggaatcgaaccccccaaagctggtttcaagccaaccccatggcctccatgactttttcaaaaaggtattagaaaaaccatttcataactttgtcaaagttaaattataggctaaatcctatatatcttaatggcacatgcagcgcaagtaggtctacaagacgctacttcccctatcatagaagagcttatcacctttcatgatcacgccctcataatcattttccttatctgcttcctagtcctgtatgcccttttcctaacactcacaacaaaactaactaatactaacatctcagacgctcaggaaatagaaaccgtctgaactatcctgcccgccatcatcctagtcctcatcgccctcccatccctacgcatcctttacataacagacgaggtcaacgatccctcccttaccatcaaatcaattggccaccaatggtactgaacctacgagtacaccgactacggcggactaatcttcaactcctacatacttcccccattattcctagaaccaggcgacctgcgactccttgacgttgacaatcgagtagtactcccgattgaagcccccattcgtataataattacatcacaagacgtcttgcactcatgagctgtccccacattaggcttaaaaacagatgcaattcccggacgtctaaaccaaaccactttcaccgctacacgaccgggggtatactacggtcaatgctctgaaatctgtggagcaaaccacagtttcatgcccatcgtcctagaattaattcccctaaaaatctttgaaatagggcccgtatttaccctatagcaccccctctaccccctctagagcccactgtaaagctaacttagcattaaccttttaagttaaagattaagagaaccaacacctctttacagtgaaatgccccaactaaatactaccgtatggcccaccataattacccccatactccttacactattcctcatcacccaactaaaaatattaaacacaaactaccacctacctccctcaccaaagcccataaaaataaaaaattataacaaaccctgagaaccaaaatgaacgaaaatctgttcgcttcattcattgcccccacaatcctaggcctacccgccgcagtactgatcattctatttccccctctattgatccccacctccaaatatctcatcaacaaccgactaatcaccacccaacaatgactaatcaaactaacctcaaaacaaatgataaccatacacaacactaaaggacgaacctgatctcttatactagtatccttaatcatttttattgccacaactaacctcctcggactcctgcctcactcatttacaccaaccacccaactatctataaacctagccatggccatccccttatgagcgggcacagtgattataggctttcgctctaagattaaaaatgccctagcccacttcttaccacaaggcacacctacaccccttatccccatactagttattatcgaaaccatcagcctactcattcaaccaatagccctggccgtacgcctaaccgctaacattactgcaggccacctactcatgcacctaattggaagcgccaccctagcaatatcaaccattaaccttccctctacacttatcatcttcacaattctaattctactgactatcctagaaatcgctgtcgccttaatccaagcctacgttttcacacttctagtaagcctctacctgcacgacaacacataatgacccaccaatcacatgcctatcatatagtaaaacccagcccatgacccctaacaggggccctctcagccctcctaatgacctccggcctagccatgtgatttcacttccactccataacgctcctcatactaggcctactaaccaacacactaaccatataccaatgatggcgcgatgtaacacgagaaagcacataccaaggccaccacacaccacctgtccaaaaaggccttcgatacgggataatcctatttattacctcagaagtttttttcttcgcaggatttttctgagccttttaccactccagcctagcccctaccccccaattaggagggcactggccccgaacaggcatcaccccgctaaatcccctagaagtcccactcctaaacacatccgtattactcgcatcaggagtatcaatcacctgagctcaccatagtctaatagaaaacaaccgaaaccaaataattcaagcactgcttattacaattttactgggtctctattttaccctcctacaagcctcagagtacttcgagtctcccttcaccatttccgacggcatctacggctcaacattttttgtagccacaggcttccacggacttcacgtcattattggctcaactttcctcactatctgcttcatccgccaactaatatttcactttacatccaaacatcactttggcttcgaagccgccgcctgatactggcattttgtagatgtggtttgactatttctgtatgtctccatctattgatgagggtcttactcttttagtataaatagtaccgttaacttccaattaactagttttgacaacattcaaaaaagagtaataaacttcgccttaattttaataatcaacaccctcctagccttactactaataattattacattttgactaccacaactcaacggctacatagaaaaatccaccccttacgagtgcggcttcgaccctatatcccccgcccgcgtccctttctccataaaattcttcttagtagctattaccttcttattatttgatctagaaattgccctccttttacccctaccatgagccctacaaacaactaacctgccactaatagttatgtcatccctcttattaatcatcatcctagccctaagtctggcctatgagtgactacaaaaaggattagactgaaccgaattggtatatagtttaaacaaaacgaatgatttcgactcattaaattatgataatcatatttaccaaatgcccctcatttacataaatattatactagcatttaccatctcacttctaggaatactagtatatcgctcacacctcatatcctccctactatgcctagaaggaataatactatcgctgttcattatagctactctcataaccctcaacacccactccctcttagccaatattgtgcctattgccatactagtctttgccgcctgcgaagcagcggtgggcctagccctactagtctcaatctccaacacatatggcctagactacgtacataacctaaacctactccaatgctaaaactaatcgtcccaacaattatattactaccactgacatgactttccaaaaaacacataatttgaatcaacacaaccacccacagcctaattattagcatcatccctctactattttttaaccaaatcaacaacaacctatttagctgttccccaaccttttcctccgaccccctaacaacccccctcctaatactaactacctgactcctacccctcacaatcatggcaagccaacgccacttatccagtgaaccactatcacgaaaaaaactctacctctctatactaatctccctacaaatctccttaattataacattcacagccacagaactaatcatattttatatcttcttcgaaaccacacttatccccaccttggctatcatcacccgatgaggcaaccagccagaacgcctgaacgcaggcacatacttcctattctacaccctagtaggctcccttcccctactcatcgcactaatttacactcacaacaccctaggctcactaaacattctactactcactctcactgcccaagaactatcaaactcctgagccaataacttaatatgactagcttacacaatagcttttatagtaaagatacctctttacggactccacttatgactccctaaagcccatgtcgaagcccccatcgctgggtcaatactacttgccgcagtactcttaaaactaggcggctatggtataatacgcctcacactcattctcaaccccctgacaaaacacatagcctaccccttccttgtactatccctatgaggcataattataacaagctccatctgcctacgacaaacagacctaaaatcgctcattgcatactcttcaatcagccacatagccctcgtagtaacagccattctcatccaaaccccctgaagcttcaccggcgcagtcattctcataatcgcccacgggcttacatcctcattactattctgcctagcaaactcaaactacgaacgcactcacagtcgcatcataatcctctctcaaggacttcaaactctactcccactaatagctttttgatgacttctagcaagcctcgctaacctcgccttaccccccactattaacctactgggagaactctctgtgctagtaaccacgttctcctgatcaaatatcactctcctacttacaggactcaacatactagtcacagccctatactccctctacatatttaccacaacacaatggggctcactcacccaccacattaacaacataaaaccctcattcacacgagaaaacaccctcatgttcatacacctatcccccattctcctcctatccctcaaccccgacatcattaccgggttttcctcttgtaaatatagtttaaccaaaacatcagattgtgaatctgacaacagaggcttacgaccccttatttaccgagaaagctcacaagaactgctaactcatgcccccatgtctaacaacatggctttctcaacttttaaaggataacagctatccattggtcttaggccccaaaaattttggtgcaactccaaataaaagtaataaccatgcacactactataaccaccctaaccctgacttccctaattccccccatccttaccaccctcgttaaccctaacaaaaaaaactcatacccccattatgtaaaatccattgtcgcatccacctttattatcagtctcttccccacaacaatattcatgtgcctagaccaagaagttattatctcgaactgacactgagccacaacccaaacaacccagctctccctaagcttcaaactagactacttctccataatattcatccctgtagcattgttcgttacatggtccatcatagaattctcactgtgatatataaactcagacccaaacattaatcagttcttcaaatatctactcatcttcctaattaccatactaatcttagttaccgctaacaacctattccaactgttcatcggctgagagggcgtaggaattatatccttcttgctcatcagttgatgatacgcccgagcagatgccaacacagcagccattcaagcaatcctatacaaccgtatcggcgatatcggtttcatcctcgccttagcatgatttatcctacactccaactcatgagacccacaacaaatagcccttctaaacgctaatccaagcctcaccccactactaggcctcctcctagcagcagcaggcaaatcagcccaattaggtctccacccctgactcccctcagccatagaaggccccaccccagtctcagccctactccactcaagcactatagttgtagcaggaatcttcttactcatccgcttccaccccctagcagaaaatagcccactaatccaaactctaacactatgcttaggcgctatcaccactctgttcgcagcagtctgcgcccttacacaaaatgacatcaaaaaaatcgtagccttctccacttcaagtcaactaggactcataatagttacaatcggcatcaaccaaccacacctagcattcctgcacatctgtacccacgccttcttcaaagccatactatttatgtgctccgggtccatcatccacaaccttaacaatgaacaagatattcgaaaaataggaggactactcaaaaccatacctctcacttcaacctccctcaccattggcagcctagcattagcaggaatacctttcctcacaggtttctactccaaagaccacatcatcgaaaccgcaaacatatcatacacaaacgcctgagccctatctattactctcatcgctacctccctgacaagcgcctatagcactcgaataattcttctcaccctaacaggtcaacctcgcttccccacccttactaacattaacgaaaataaccccaccctactaaaccccattaaaggcctggcagccggaagcctattcgcaggatttctcattactaacaacatttcccccgcatcccccttccaaacaacaatccccctctacctaaaactcacagccctcgctgtcactttcctaggacttctaacagccctagacctcaactacctaaccaacaaacttaaaataaaatccccactatgcacattttatttctccaacatactcggattctaccctagcatcacacaccgcacaatcccctatctaggccttcttacgagccaaaacctgcccctactcctcctagacctaacctgactagaaaagctattacctaaaacaatttcacagcaccaaatctccacctccatcatcacctcaacccaaaaaggcataattaaactttacttcctctctttcttcttcccactcatcctaaccctactcctaatcacataacctattcccccgagcaatctcaattacaatatatacaccaacaaacaatggtcaaccagtaactactactaatcaacgcccataatcatacaaagcccccgcaccaataggatcctcccgaatgaaccctgacccctctccttcataaattattcagcttcctacactattaaagtttaccacaaccaccaccccatcatactctttcacccacaggacgaatcctacctccatcgctaaccccactaaaacactcaccaagacctcaacccctgacccccatgcctcaggatactcctcaatagccatcgctgtagtatatccaaagacaaccatcattccccctaaataaattaaaaaaactattaaacccatataacctcccccaaaattcagaataataacacacccgaccacaccgctaacaatcaatactaaacccccataaataggagaaggcttagaagaaaaccccacaaaccccattactaaacccacactcaacagaaacaaagcatacatcattattctcgcacggactacaaccacgaccaatgatatgaaaaaccatcgttgtatttcaactacaagaacaccaatgaccccaatacgcaaaattaaccccctaataaaattaattaaccactcattcatcgacctccccaccccatccaacatctccgcatgatgaaacttcggctcactccttggcgcctgcctgatcctccaaatcaccacaggactattcctagccatgcactactcaccagacgcctcaaccgccttttcatcaatcgcccacatcactcgagacgtaaattatggctgaatcatccgctaccttcacgccaatggcgcctcaatattctttatctgcctcttcctacacatcgggcgaggcctatattacggatcatttctctactcagaaacctgaaacatcggcattatcctcctgcttgcaactatagcaacagccttcataggctatgtcctcccgtgaggccaaatatcattctgaggggccacagtaattacaaacttactatccgccatcccatacattgggacagacctagttcaatgaatctgaggaggctactcagtagacagtcccaccctcacacgattctttacctttcacttcatcttgcccttcattattgcagccctagcaacactccacctcctattcttgcacgaaacgggatcaaacaaccccctaggaatcacctcccattccgataaaatcaccttccacccttactacacaatcaaagacgccctcggcttacttctcttccttctctccttaatgacattaacactattctcaccagacctcctaggcgacccagacaattataccctagccaaccccttaaacacccctccccacatcaagcccgaatgatatttcctattcgcctacacaattctccgatccgtccctaacaaactaggaggcgtccttgccctattactatccatcctcatcctagcaataatccccatcctccatatatccaaacaacaaagcataatatttcgcccactaagccaatcactttattgactcctagccgcagacctcctcattctaacctgaatcggaggacaaccagtaagctacccttttaccatcattggacaagtagcatccgtactatacttcacaacaatcctaatcctaataccaactatctccctaattgaaaacaaaatactcaaatgggcctgtccttgtagtataaactaatacaccagtcttgtaaaccggagatgaaaacctttttccaaggacaaatcagagaaaaagtctttaactccaccattagcacccaaagctaagattctaatttaaactattctctgttctttcatggggaagcagatttgggtaccacccaagtattgactcacccatcaacaaccgctatgtatttcgtacattactgccagccaccatgaatattgtacggtaccataaatacttgaccacctgtagtacataaaaacccaatccacatcaaaaccccctccccatgcttacaagcaagtacagcaatcaaccctcaactatcacacatcaactgcaactccaaagccacccctcacccactaggataccaacaaacctacccacccttaacagtacatagtacataaagccatttaccgtacatagcacattacagtcaaatcccttctcgtccccatggatgacccccctcagataggggtcccttgaccaccatcctccgtgaaatcaatatcccgcacaagagtgctactctcctcgctccgggcccataacacttgggggtagctaaagtgaactgtatccgacatctggttcctacttcagggtcataaagcctaaatagcccacacgttccccttaaataagacatcacgatg
data/examples/genes/mouse.txt ADDED
@@ -0,0 +1 @@
1
+ gttaatgtagcttaataacaaagcaaagcactgaaaatgcttagatggataattgtatcccataaacacaaaggtttggtcctggccttataattaattagaggtaaaattacacatgcaaacctccatagaccggtgtaaaatcccttaaacatttacttaaaatttaaggagagggtatcaagcacattaaaatagcttaagacaccttgcctagccacacccccacgggactcagcagtgataaatattaagcaataaacgaaagtttgactaagttatacctcttagggttggtaaatttcgtgccagccaccgcggtcatacgattaacccaaactaattatcttcggcgtaaaacgtgtcaactataaataaataaatagaattaaaatccaacttatatgtgaaaattcattgttaggacctaaactcaataacgaaagtaattctagtcatttataatacacgacagctaagacccaaactgggattagataccccactatgcttagccataaacctaaataattaaatttaacaaaactatttgccagagaactactagccatagcttaaaactcaaaggacttggcggtactttatatccatctagaggagcctgttctataatcgataaaccccgctctacctcaccatctcttgctaattcagcctatataccgccatcttcagcaaaccctaaaaaggtattaaagtaagcaaaagaatcaaacataaaaacgttaggtcaaggtgtagccaatgaaatgggaagaaatgggctacattttcttataaaagaacattactataccctttatgaaactaaaggactaaggaggatttagtagtaaattaagaatagagagcttaattgaattgagcaatgaagtacgcacacaccgcccgtcaccctcctcaaattaaattaaacttaacataattaatttctagacatccgtttatgagaggagataagtcgtaacaaggtaagcatactggaaagtgtgcttggaataatcatagtgtagcttaatattaaagcatctggcctacacccagaagatttcatgaccaatgaacactctgaactaatcctagccctagccctacacaaatataattatactattatataaatcaaaacatttatcctactaaaagtattggagaaagaaattcgtacatctaggagctatagaactagtaccgcaagggaaagatgaaagactaattaaaagtaagaacaagcaaagattaaaccttgtaccttttgcataatgaactaactagaaaacttctaactaaaagaattacagctagaaaccccgaaaccaaacgagctacctaaaaacaattttatgaatcaactcgtctatgtggcaaaatagtgagaagatttttaggtagaggtgaaaagcctaacgagcttggtgatagctggttacccaaaaaatgaatttaagttcaattttaaacttgctaaaaaaacaacaaaatcaaaaagtaagtttagattatagccaaaagagggacagctcttctggaacggaaaaaacctttaatagtgaataattaacaaaacagcttttaaccattgtaggcctaaaagcagccaccaataaagaaagcgttcaagctcaacataaaatttcaattaattccataatttacaccaacttcctaaacttaaaattgggttaatctataactttatagatgcaacactgttagtatgagtaacaagaattccaattctccagacatacgcgtataacaactcggataaccattgttagttaatcagactataggcaataatcacactataaataatccacctataacttctctgttaacccaacaccggaatgcctaaaggaaagatccaaaaagataaaaggaactcggcaaacaagaaccccgcctgtttaccaaaaacatcacctctagcattacaagtattagaggcactgcctgcccagtgactaaagtttaacggccgcggtatcctgaccgtgcaaaggtagcataatcacttgttccttaattagggactagcatgaacggctaaacgagggtccaactgtctcttatctttaatcagtgaaattgacctttcagtgaagaggctgaaatataataataagacgagaagaccctatggagcttaaattatataacttatctatttaatttattaaacctaatggcccaaaaactatagtataagtttgaaatttcggttggggtgacctcggagaataaaaaatcctccgaatgattataacctagacttacaagtcaaagtaaaatcaacatatcttattgacccagatatattttgatcaacggaccaagttaccctagggataacagcgcaatcctatttaagagttcatatcgacaattagggtttacgacctcgatgttggatcaggacatcccaatggtgtagaagctattaatggttcgtttgttcaacgattaaagtcctacgtgatctgagttcagaccggagcaatccaggtcggtttctatctatttacgatttctcccagtacgaaaggacaagagaaatagagccaccttacaaataagcgctctcaacttaatttatgaataaaatctaaataaaatatatacgtacaccctctaacctagagaaggttattagggtggcagagccaggaaattgcgtaagacttaaaaccttgttcccagaggttcaaatcctctccctaatagtgttctttattaatatcctaacactcctcgtccccattctaatcgccatagccttcctaacattagtagaacgcaaaatcttagggtacatacaactacgaaaaggccctaacattgttggtccatacggcattttacaaccatttgcagacgccataaaattatttataaaagaaccaatacgccctttaacaacctctatatccttatttattattgcacctaccctatcactcacactagcattaagtctatgagttcccctaccaataccacacccattaattaatttaaacctagggattttatttattttagcaacatctagcctatcagtttactccattctatgatcaggatgagcctcaaactccaaatactcactattcggagctttacgagccgtagcccaaacaatttcatatgaagtaaccatagctattatccttttatcagttctattaataaatggatcctactctctacaaacacttattacaacccaagaacacatatgattacttctgccagcctgacccatagccataatatgatttatctcaaccctagcagaaacaaaccgggcccccttcgacctgacagaaggagaatcagaattagtatcagggtttaacgtagaatacgcagccggcccattcgcgttattctttatagcagagtacactaacattattctaataaacgccctaacaactattatcttcctaggacccctatactatatcaatttaccagaactctactcaactaacttcataatagaagctctactactatcatcaacattcctatggatccgagcatcttatccacgcttccgttacgatcaacttatacatcttctatgaaaaaactttctacccctaacactagcattatgtatgtgacatatttctttaccaatttttacagcgggagtaccaccatacatatagaaatatgtctgataaaagaattactttgatagagtaaattatagaggttcaagccctcttatttctaggacaataggaattgaacctacacttaagaattcaaaatttctccgtgcacctaaacaccttatcctaatagtaaggtcagctaattaagctatcgggcccataccccgaaaacgttggtttaaatccttcccgtactaataaatcctatcacccttgccatcatctacttcacaatcttcttaggtcctgtaatcacaatatccagcaccaacctaatactaatatgagtaggcctagaattcagcctactagcaattatccccatactaatcaacaaaaaaaacccacgatcaactgaagcagcaacaaaatacttcgtcacacaagcaacagcctcaataattatcctcctggccatcgtactcaactataaacaactaggaacatgaatatttcaacaacaaacaaacggtcttatccttaacataacattaatagccctatccataaaactaggcctcgccccattccacttctgattaccagaagtaactcaagggatcccactgcacataggacttattcttcttacatgacaaaaaattgctcccctatcaattttaattcaaatttacccgctactcaactctactatcattttaatactagcaattacttctattttcataggggcatgaggaggacttaaccaaacacaaatacgaaaaattatagcctattcatcaattgcccacataggatgaatattagcaattcttccttacaacccatccctcactctactcaacctcataatctatattattcttacagcccctatattcatagcacttatactaaataactctataaccatcaactcaatctcacttctatgaaataaaactccagcaatactaactataatctcactgatattactatccctaggaggccttccaccactaacaggattcttaccaaaatgaattatcatcacagaacttataaaaaacaactgtctaattatagcaacactcatagcaataatagctctactaaacctattcttttatattcgcctaatttattccacttcactaacaatatttccaaccaacaataactcaaaaataataactcaccaaacaaaaactaaacccaacctaatattttccaccctagctatcataagcacaataaccctacccctagccccccaactaattacctagaagtttaggatatactagtccgcgagccttcaaagccctaagaaaacacacaagtttaacttctgataaggactgtaagacttcatcctacatctattgaatgcaaatcaattgctttaattaagctaagacctcaactagattggcaggaattaaacctacgaaaatttagttaacagctaaataccctattactggcttcaatctacttctaccgccgaaaaaaaaaaatggcggtagaagtcttagtagagatttctctacaccttcgaatttgcaattcgacatgaatatcaccttaagacctctggtaaaaagaggatttaaacctctgtgtttagatttacagtctaatgcttactcagccattttacctatgttcattaatcgttgattattctcaaccaatcacaaagatatcggaaccctctatctactattcggagcctgagcgggaatagtgggtactgcactaagtattttaattcgagcagaattaggtcaaccaggtgcacttttaggagatgaccaaatttacaatgttatcgtaactgcccatgcttttgttataattttcttcatagtaataccaataataattggaggctttggaaactgacttgtcccactaataatcggagccccagatatagcattcccacgaataaataatataagtttttgactcctaccaccatcatttctccttctcctagcatcatcaatagtagaagcaggagcaggaacaggatgaacagtctacccacctctagccggaaatccagtccatgcaggagcatcagtagacctaacaattttctcccttcatttagctggagtgtcatctattttaggtgcaattaattttattaccactattatcaacatgaaacccccagccataacacagtatcaaactccactatttgtctgatccgtacttattacagccgtactgctcctattatcactaccagtgctagccgcaggcattactatactactaacagaccgcaacctaaacacaactttctttgatcccgctggaggaggggacccaattctctaccagcatctgttctgattctttgggcacccagaagtttatattcttatcctcccaggatttggaattatttcacatgtagttacttactactccggaaaaaaagaacctttcggctatataggaatagtatgagcaataatgtctattggctttctaggctttattgtatgagcccaccacatattcacagtaggattagatgtagacacacgagcttgctttacatcagccactataattatcgcaattcctaccggtgtcaaagtatttagctgacttgcaaccctacacggaggtaatattaaatgatctccagctatactatgagccttaggctttattttcttatttacagttggtggtctaaccggaattgttttatccaactcatcccttgacatcgtgcttcacgatacatactatgtagtagcccatttccactatgttctatcaatgggagcagtgtttgctatcatagcaggatttgttcactgattcccattattttcaggcttcaccctagatgacacatgagcaaaagcccacttcgccatcatattcgtaggagtaaacataacattcttccctcaacatttcctgggcctttcaggaataccacgacgctactcagactacccagatgcttacaccacatgaaacactgtctcttctataggatcatttatttcactaacagctgttctcatcatgatctttataatttgagaggcctttgcttcaaaacgagaagtaatatcagtatcgtatgcttcaacaaatttagaatgacttcatggctgccctccaccatatcacacattcgaggaaccaacctatgtaaaagtaaaataagaaaggaaggaatcgaaccccctaaaattggtttcaagccaatctcatatcctatatgtctttctcaataagatattagtaaaatcaattacataactttgtcaaagttaaattatagatcaataatctatatatcttatatggcctacccattccaacttggtctacaagacgccacatcccctattatagaagagctaataaatttccatgatcacacactaataattgttttcctaattagctccttagtcctctatatcatctcgctaatattaacaacaaaactaacacatacaagcacaatagatgcacaagaagttgaaaccatttgaactattctaccagctgtaatccttatcataattgctctcccctctctacgcattctatatataatagacgaaatcaacaaccccgtattaaccgttaaaaccatagggcaccaatgatactgaagctacgaatatactgactatgaagacctatgctttgattcatatataatcccaacaaacgacctaaaacctggtgaactacgactgctagaagttgataaccgagtcgttctgccaatagaacttccaatccgtatattaatttcatctgaagacgtcctccactcatgagcagtcccctccctaggacttaaaactgatgccatcccaggccgactaaatcaagcaacagtaacatcaaaccgaccagggttattctatggccaatgctctgaaatttgtggatctaaccatagctttatgcccattgtcctagaaatggttccactaaaatatttcgaaaactgatctgcttcaataatttaatttcactatgaagctaagagcgttaaccttttaagttaaagttagagaccttaaaatctccatagtgatatgccacaactagatacatcaacatgatttatcacaattatctcatcaataattaccctatttatcttatttcaactaaaagtctcatcacaaacattcccactggcaccttcaccaaaatcactaacaaccataaaagtaaaaaccccttgagaattaaaatgaacgaaaatctatttgcctcattcattaccccaacaataataggattcccaatcgttgtagccatcattatatttccttcaatcctattcccatcctcaaaacgcctaatcaacaaccgtctccattctttccaacactgactagttaaacttattatcaaacaaataatgctaatccacacaccaaaaggacgaacatgaaccctaataattgtttccctaatcatatttattggatcaacaaatctcctaggccttttaccacatacatttacacctactacccaactatccataaatctaagtatagccattccactatgagctggagccgtaattacaggcttccgacacaaactaaaaagctcacttgcccacttccttccacaaggaactccaatttcactaattccaatacttattattattgaaacaattagcctatttattcaaccaatggcattagcagtccggcttacagctaacattactgcaggacacttattaatacacctaatcggaggagctactctagtattaataaatattagcccaccaacagctaccattacatttattattttacttctactcacaattctagaatttgcagtagcattaattcaagcctacgtattcaccctcctagtaagcctatatctacatgataatacataatgacccaccaaactcatgcatatcacatagttaatccaagtccatgaccattaactggagccttttcagccctccttctaacatcaggtctagtaatatgatttcactataattcaattacactattaacccttggcctactcaccaatatcctcacaatatatcaatgatgacgagacgtaattcgtgaaggaacctaccaaggccaccacactcctattgtacaaaaaggactacgatatggtataattctattcatcgtctcggaagtatttttctttgcaggattcttctgagcgttctatcattctagcctcgtaccaacacatgatctaggaggctgctgacctccaacaggaatttcaccacttaaccctctagaagtcccactacttaatacttcagtacttctagcatcaggtgtttcaattacatgagctcatcatagccttatagaaggtaaacgaaaccacataaatcaagccctactaattaccattatactaggactttacttcaccatcctccaagcttcagaatactttgaaacatcattctccatttcagatggtatctatggttctacattcttcatggctactggattccatggactccatgtaattattggatcaacattccttattgtttgcctactacgacaactaaaatttcacttcacatcaaaacatcacttcggatttgaagccgcagcatgatactgacattttgtagacgtaatctgacttttcctatacgtctccatttattgatgaggatcttactcccttagtataattaatataactgacttccaattagtagattctgaataaacccagaagagagtaatcaacctgtacactgttatcttcattaatattttattatccctaacgctaattctagttgcattctgactcccccaaataaatctgtactcagaagcaaatccatatgaatgcggattcgaccctacaagctctgcacgtctaccattctcaataaaatttttcttggtagcaattacatttctattatttgacctagaaattgctcttctacttccactaccatgagcaattcaaacaattaaaacctctactataataattatagcctttattctagtcacaattctatctctaggcctagcatatgaatgaacacaaaaaggattagaatgaacagagtaaatggtaattagtttaaaaaaaattaatgatttcgactcattagattatgatgctgttcataattaccaatatgccatctaccttcttcaacctcaccatagccttctcactatcacttctagggacacttatatttcgctctcacctaatatccacattactatgcctggaaggcatagtattatccttatttattataacttcagtaacttccctaaactccaactccataagctccataccaatccccatcaccttagttttcgcagcctgcgaagcagctgtaggactagccctactagtaaaagtttcaaacacgtacggaacagattacgtccaaaatctcaacctactacaatgctaaaaattattcttccctcactaatgctactaccactaacctgactatcaagccctaaaaaaacctgaacaaacgtaacctcatatagttttctaattagtttaaccagcctaacacttctatgacaaaccgacgaaaattataaaaacttttcaaatatattctcctcagaccccctatccacaccattaattattttaacagcctgattactgccactaatattaatagctagccaaaaccacctaaaaaaagataataacgtactacaaaaactctacatctcaatactaatcagcttacaaattctcctaatcataaccttttcagcaactgaactaattatattttatattttatttgaagcaaccttaatcccaacacttattattattacccgatgagggaaccaaactgaacgcctaaacgcagggatttatttcctattttataccctaatcggttctattccactgctaattgccctcatcttaatccaaaaccatgtaggaaccctaaacctcataattttatcattcacaacacacaccttagacgcttcatgatctaacaacttactatggttggcatgcataatagcatttcttattaaaataccattatatggagttcacctatgactaccaaaagcccatgttgaagctccaattgctgggtcaataattctagcagctattcttctaaaattaggtagttacggaataattcgcatctccattattctagacccactaacaaaatatatagcataccccttcatccttctctccctatgaggaataattataactagctcaatctgcttacgccaaacagatttaaaatcactaatcgcctactcctcagttagccacatagcacttgttattgcatcaatcataatccaaactccatgaagcttcataggagcaacaatactaataatcgcacatggcctcacatcatcactcctattctgcctagcaaactccaactacgaacggatccacagccgtactataatcatggcccgaggacttcaaatggtcttcccacttatagccacatgatgactgatagcaagtctagctaatctagctctacccccttcaatcaatctaataggagaattattcattaccatatcattattttcttgatcaaactttaccattattcttataggaattaacattattattacaggtatatactcaatatacataattattaccacccaacgcggcaaactaaccaaccatataattaacctccaaccctcacacacacgagaactaacactaatagcccttcacataattccacttattcttctaactaccagtccaaaactaattacaggcctgacaatatgtgaatatagtttacaaaaaacattagactgtgaatctgacaacaggaaataaacctccttattcaccaagaaagattgcaagaactgctaattcatgcttccatgtttaaaaacatggctttcttacttttataggataatagtaatccattggtcttaggaaccaaaaaccttggtgcaaatccaaataaaagtaatcaatattttcacaacctcaatcttattaatcttcattcttctactatccccaatcctaatttcaatatcaaacctaattaaacacatcaacttcccactgtacaccaccacatcaatcaaattctccttcattattagcctcttacccctattaatatttttccacaataatatagaatatataattacaacctggcactgagtcaccataaattcaatagaacttaaaataagcttcaaaactgactttttctctatcctgtttacatctgtagccctttttgtcacatgatcaattatacaactctcttcatgatatatacactcagacccaaacatcaatcgattcattaaatatcttacactattcctgattaccatgcttatcctcacctcagccaacaacatatttcaacttttcattggctgagaaggggtgggaattatatctttcctactaattggatgatggtacggacgaacagacgcaaatactgcagccctacaagcaatcctctataaccgcatcggagacatcggattcattttagctatagtttgattttccctaaacataaactcatgagaacttcaacagattatattctccaacaacaacgacaatctaattccacttataggcctattaatcgcagctacaggaaaatcagcacaatttggcctccacccatgactaccatcagcaatagaaggccctacaccagtttcagcactactacactcaagtacaatagtagttgcaggaattttcctactggtccgattccaccccctcacgactaataataactttattttaacaactatactttgcctcggagccctaaccacattatttacagctatttgtgctctcacccaaaacgacatcaaaaaaatcattgccttctctacatcaagccaactaggcctgataatagtgacgctaggaataaaccaaccacacctagcattcctacacatctgtacccacgcattcttcaaagctatactctttatatgctctggctcaatcattcatagcctggcagacgaacaagacatccgaaaaataggaaacatcacaaaaatcataccattcacatcatcatgcctagtaatcggaagcctcgccctcacaggaataccattcctaacagggttctactcaaaagacctaattattgaagcaattaatacctgcaacaccaacgcctgagccctactaattacactaatcgccacttctataacagctatgtacagcatacgaatcatttacttcgtaacaataacaaaaccgcgttttccccccctaatctccattaacgaaaatgacccagacctcataaacccaatcaaacgcctagcattcggaagcatctttgcaggatttgtcatctcatataatattccaccaaccagcattccagtcctcacaataccatgatttttaaaaaccacagccctaattatttcagtattaggattcctaatcgcactagaactaaacaacctaaccataaaactatcaataaataaagcaaatccatattcatccttctcaactttactggggtttttcccatctattattcaccgcattacacccataaaatctctcaacctaagcctaaaaacatccctaactctcctagacttgatctggttagaaaaaaccatcccaaaatccacctcaactcttcacacaaacataaccactttaacaaccaaccaaaaaggcttaattaaattgtactttatatcattcctaattaacatcatcttaattattatcttatactcaattaatctcgagtaatctcgataataataaaaatacccgcaaacaaagatcacccagctactaccatcattcaagtagcacaactatatattgccgctaccccaatccctccttccaacataactccaacatcatcaacctcatacatcaaccaatctcccaaaccatcaagattaattactccaacttcatcataataattaagcacacaaattaaaaaaacctctataatcacccccaatactaaaaaacccaaaattaatcagttagatccccaagtctctggatattcctcagtagctatagcagtcgtatatccaaacacaaccaacatcccccctaaataaattaaaaaaactattaaacctaaaaacgatccaccaaaccctaaaaccattaaacaaccaacaaacccactaacaattaaacctaaacctccataaataggtgaaggctttaatgctaacccaagacaaccaaccaaaaataatgaacttaaaacaaaaatataattattcattatttctacacagcattcaactgcgaccaatgacatgaaaaatcatcgttgtaattcaactacagaaacacctaatgacaaacatacgaaaaacacacccattatttaaaattattaaccactcattcattgacctacctgccccatccaacatttcatcatgatgaaactttgggtcccttctaggagtctgcctaatagtccaaatcattacaggtcttttcttagccatacactacacatcagatacaataacagccttttcatcagtaacacacatttgtcgagacgtaaattacgggtgactaatccgatatatacacgcaaacggagcctcaatattttttatttgcttattccttcatgtcggacgaggcttatattatggatcatatacatttatagaaacctgaaacattggagtacttctactgttcgcagtcatagccacagcatttataggctacgtccttccatgaggacaaatatcattctgaggtgccacagttattacaaacctcctatcagccatcccatatattggaacaaccctagtcgaatgaatttgagggggcttctcagtagacaaagccaccttgacccgattcttcgctttccacttcatcttaccatttattatcgcggccctagcaatcgttcacctcctcttcctccacgaaacaggatcaaacaacccaacaggattaaactcagatgcagataaaattccatttcacccctactatacaatcaaagatatcctaggtatcctaatcatattcttaattctcataaccctagtattatttttcccagacatactaggagacccagacaactacataccagctaatccactaaacaccccaccccatattaaacccgaatgatatttcctatttgcatacgccattctacgctcaatccccaataaactaggaggtgtcctagccttaatcttatctatcctaattttagccctaatacctttccttcatacctcaaagcaacgaagcctaatattccgcccaatcacacaaattttgtactgaatcctagtagccaacctacttatcttaacctgaattgggggccaaccagtagaacacccatttattatcattggccaactagcctccatctcatacttctcaatcatcttaattcttataccaatctcaggaattatcgaagacaaaatactaaaattatatccatgtcttgatagtataaacattactctggtcttgtaaacctgaaatgaagatcttctcttctcaagacatcaagaagaaggagctactccccaccaccagcacccaaagctggtattctaattaaactacttcttgagtacataaatttacatagtacaacagtacatttatgtatatcgtacattaaactattttccccaagcatataagctagtacattaaatcaatggttcaggtcataaaataatcatcaacataaatcaatatatataccatgaatattatcttaaacacattaaactaatgttataaggacatatctgtgttatctgacatacaccatacagtcataaactcttctcttccatatgactatccccttccccatttggtctattaatctaccatcctccgtgaaaccaacaacccgcccaccaatgcccctcttctcgctccgggcccattaaacttgggggtagctaaactgaaactttatcagacatctggttcttacttcagggccatcaaatgcgttatcgcctcatacgttccccttaaataagacatctcgatggtatcgggtctaatcagcccatgaccaacataactgtggtgtcatgcatttggtatctttttattttggcctactttcatcaacatagccgtcaaggcatgaaaggacagcacacagtctagacgcacctacggtgaagaatcattagtccgcaaaacccaatcacctaaggctaattattcatgcttgttagacataaatgctactcaataccaaattttaactctccaaaccccccaccccctcctcttaatgccaaacccaaaaaacactaagaacttgaaagacatataatattaactatcaaaccctatgtcctgatcaattctagtagttcccaaaatatgacttatattttagtacttgtaaaaattttacaaaatcaatgttccgtgaaccaaaactctaatcatactctattacgcaataaacattaacaa
data/examples/genes/rat.txt ADDED
@@ -0,0 +1 @@
1
+ gttaatgtagcttataataaagcaaagcactgaaaatgcttagatggattcaaaaatcccataaacacaaaggtttggtcctggccttataattaattggaggtaagattacacatgcaaacatccataaaccggtgtaaaatcccttaaagatttgcctaaaacttaaggagagggcatcaagcacataatatagctcaagacgccttgcctagccacacccccacgggactcagcagtgataaatattaagcaatgaacgaaagtttgactaagctagtacctctcagggttggtaaatttcgtgccagccaccgcggtcatacgattaacccaaactaattattttcggcgtaaaacgtgccaactataaatctcataatagaattaaaatccaacttatatgtgaaaattcattgttaggacctaagcccaataacgaaagtaattctaatcatttatataatgcacgatagctaagacccaaactgggattagataccccactatgcttagccctaaaccttaataattaaacctacaaaattatttgccagagaactactagctacagcttaaaactcaaaggacttggcggtactttatatccatctagaggagcctgttctataatcgataaaccccgttctaccttaccccttctcgctaattcagcctatataccgccatcttcagcaaaccctaaaaaggcactaaagtaagcacaagaacaaacataaaaacgttaggtcaaggtgtagccaatgaagcggaaagaaatgggctacattttcttttcccagagaacattacgaaacctttatgaaactaaaggacaaaggaggatttagtagtaaattaagaatagagagcttaattgaatagagcaatgaagtacgcacacaccgcccgtcaccctcctcaaattagattgacattcacatatacataatttcactaacaaatttatgagaggagataagtcgtaacaaggtaagcatactggaaagtgtgcttggaataatcacagtgtagcttaatcacaaagcatctggcctacacccagaagaattcataaaaaatgaacactttgaactaaccctagccctacaaccaaccaacataactaaacccccacataaactaaaacatttaactcaaaaagtattggagaaagaaatttacttaccaagagctatagagaaagtaccgcaagggaaatgatgaaagactaatttaaagtaaaaacaagacaaagattaaacctgtaccttttgcataatgaattaactagaaaatccttaacaaaaagaatttaagctaagaaccccgaaaccaaacgagctacctaaaaacaatttcatgaatcaacccgtctatgtagcaaaatagtgggaagatttttaggtagaggtgaaaagcctatcgagcttggtgatagctggttgcccaaaaaagaatttcagttcaaactttaagcttccatcagaacaacaaatcaaaatgtaaacttaaaatatagccaaaagagggacagctctttaggaaacggaaaaaaccttaaatagtgaataaacaactacaatcacttaaccattgtaggcttaaaagcaagccatcaataaagaaagcgtcaagccacatcatcttacacacacactaattccacaaacctcaaaaattccaaaattacaaattgggctaaatctatgatcctagtgaatactgttaatatgtgaacaagaaccaatccaccaagcacaagtgctaagacaaccggataaccattgttaattattgaatcataggcataacccaacaatagaattacctatccctaactcgttagcccaacacaggcgtgctttaaggaaagtttaaaaaagtaaaggaactcggcaaacacgaaccccgcctgtttaccaaaaacatctcctctagcataacaagtattagtggcatcgcctgcccagtgactaaagttccacggccgcggtatcccgaccgtgcaaaggtaggataatcacttgttccttaattagggactagaatgaatggctaaacgagggtccaaccgtctcttacttgcaatcagtgaaattgaccttccagtgaaggggcggactcataataaaagacgagaagaccctatggagctttaatttactaatttcaatttatataaaaaaacctaatgggcgaaaacaacaaaattatgaactaccaaatttcggttggggtgacctcggagaataaaaaatcctccgaatgattataaccgagtcggtaaccgtgtccgacccagtcaagtaatactaatatcttattgacccaattattgatcaacggaccaagttaccctagggtaacagcgcgacctatttaagagttcatatcgacaattagggtttacgacctcgatgttggatcaggacatcccaatggtgcagaagctattaatggttcgtttgttcaacgattaaagtcctacgtgatctaagtccggcaatccaggtcggtttctatctatttacaatttctcccagttacgaaaggacaagagaaatggagaccaaccaatcctaggcttccaaccaatttagaaaaacttaataaagtatatatgtacaataaataaccttagacccaagttattagggtggcagagccaagtaattgcgtaagacttaaaaccttgttcccagaggttcaaatcctctccctaatagtgtactttattaatatcctaacactcctaatcccaatcttaattgccataggccttctcaccctagtagaacggaaaatcctaggctacatacaattacgcaaaggccccaacaacgaaggcccatatggtaaactacaaccatttgcagatgccataaaactattcataaaagaacccatacgccctctaaccacctcaatatcactatttattatcgccccaaccctctcccttacactagctctaagcctatgaattcccttaccaataccccacccccttatcaacctcaacctaggcataccatttattctagccacatccagcctttcggtctactccattctatgatcgggatgagcctcaaattcaaaatactccctattcggagccctacgagccgttgcccaaaccatctcttacgaagtcacaatagccttatacctcttatccgtcctcctaataagcggctccttctccctacaaatacttatcactacacaagaacatatctgactattaatccccgcctgaccaatagccataatatgatacatttcaaccctcgcagaaacaaatcgagctcccttcgacttaacagaaggagaatcagaattagtctcaggctttaacgtcgaatacgccgcaggaccattcgccctattcttcatagccgagtacaccaacattattctaataaacgccctaacatcaattgtattcctaggccccttatatcatatcaattaccctgaattatactcaaccagcttcataacagaaacactacttctatccacaactttcctatggattcgagcatcctacccccgttttcgatatgaccaactaatgcacctcctatgaaaaaatttcctcccactaacactagcattctgcatatgatacatttccctgccaattttcctagcaggaattccaccctacacatagaaatatgtctgacaaaagagttactttgatagagtaaataatagaggtttaaatcctcttatttctaggacaataggaattgaacctacacctaagaattcaaaattctccgtgccaccaatacaccctatcctacatagtaaggtcagctaactaagctatcgggcccataccccgaaaatgttggttaaacccttcccgtactaataaatccaattaccctaaccattatttacttaaccacctttaaaggccgcctaatcacgacacttagcaccaacttaccaccaatatgagtaggattggaaataagccttttagctatcatcccacttctagccaacaaaaaaagcccacgatcaactgaagcagcaacaaaatattttctaacccaagctacagcctcaataattatcctactagtcatcatcctcaactacaaacaatcaggaatatgaacccttcaacaacaaaccaataacatactactcaacataatactcatttcactggccataaaacttggactagccccattccactactgactacccgaagtcacccaaggaattcccctacacattggattaatcttactaacatgacaaaaaattgctccactatcaattctataccaattttatcaactcctaaacccaactatcaccaccattctcgcaatttcatcagtctttgttggcgcctgaggaggacttaaccagacccaaacacgaaaaatcatagcatactcatcaattgcccacataggatgaataacagcaatccttccatacaaccctaacttaaccctcctaaacttaacaatttacatcctacttactgttccaatattcaattacatcataacaaactcagcaacaacaatcaacacactctcactcgcatgaaataaaactcccataatcctaaccatagcatccatcatcctcctatcactaggaggactcccccctctcacaggatttttaccaaaatgagcaattatctccgagcttctaaaaaacaactgctcaaccctatcaacactaatagctatcatagccctattaagcctattcttctatactcgactaatttactctatatccctcaccacattcccaaccaacaacaactccaaaataatctcccaccaccaaaacccaaaacataattttatcctcccaaccctcacagtattaagtaccctaaccctaccgctttcctcccaactaatcacatagaagtttaggatatacagttcaagagccttcaaagcccttagaaaacaaacaagtttaacttctgataaggactgtaagactatatcttacatctgttaaatgcaaatcaactgctttaattaagctaaatcctcaactagattggaaggaatcaaattcctacgaaaatttagttaacagctaaataccctacttactggcttcaatctacttctcccgcctatcagaaaagaggcgggagaagccttagtagaggagattctctacaccttcgaacttgcaattcgacatgataatcaccttaaggctttttggtaaaaagggggctcaacccctgtctttagatttacagtctaatgcttactcagccattttacctatgttcgtaaaccgttgactcttttcaactaaccacaaagatatcggaaccctctacctattatttggagcctgagcaggaatagtagggacagctttgagtattctaattcgagctgaactaggacagccaggcgcactcctaggagatgaccaaatctataatgtcatcgtcacagcccatgcattcgtaataattttctttatagtaatacctataataattggaggcttcggaaactgacttgtaccactaataattggagcccctgatatagcattcccacgaataaataacataagcttttgactgcttcctccatcatttctactccttttagcatcctccatagtagaagctggagctggaacaggatgaacagtatatccccccttagccggaaacctagcccatgctggggtatccgtagatttaactattttttccctccacctagccggggtgtcttctatcttaggagctatcaactttatcaccactatcattaatataaaaccccctgctataacccaatatcagacacctctctttgtatgatccgtactaattacagccgtcctactacttctctcactgccagtattagcagcaggtatcactatactccttacagaccgaaatctaaatactactttcttcgaccccgctggaggtggagacccaattctttatcaacacctattctgattcttcggccacccagaagtgtacatcttaattcttccagggtttggaattatttcacatgtagttacctattactctggaaaaaaagaacccttcggatatataggtatggtatgaaccataatatctattggcttcctaggatttattgtatgagcacatcacatattcacagtaggcctagatgtagacacccgagcctactttacatctgccactataattatcgcaattcctacaggcgtaaaagtattcagctgactcgctacactacatggaggaaatatcaaatgatcccccgccatattatgagccttagggtttatcttcttattcacagtagggggcctaacagggatcgtactatctaactcatcccttgacattgtacttcatgatacatactacgtagtagctcacttccactatgtcttatctataggagcagtattcgccatcatagctggcttcgtccactgattcccactattctcaggctataccctaaatgacacatgagcaaaagcccactttgccattatatttgtaggtgtaaacataacattttttcctcaacacttcctaggattagcagggatacctcgtcgttactctgattatccagatgcttataccacatgaaatacagtctcctctataggctcattcatctcacttacggccgtccttgtaatgatcttcatgatttgagaagccttcgcatcaaaacgagaagtgctctcaatttcctactcttcaactaacctagaatgactgcatggatgccccccaccttaccacacattcgaagaaccttcctatgtaaaagttaaataagaaaggaaggaatcgaccccctacaactggtttcaagccaatttcataaccattatgtctttctcaatgagatattagtaaaataattacataaccttgtcaaggttaagttatagacctaatcctatatatcttacatggcttacccatttcaacttggcttacaagacgctacatcacctatcatagaagaacttacaaactttcatgaccacaccctaataattgtattcctcatcagctccctagtactttatattatttcactaatactaacaacaaaactaacacacacaagcacaatagacgcccaagaagtagaaacaatttgaacaattctcccagctgtcattcttattctaattgcccttccctccctacgaattctatacataatagacgagattaataacccagttctaacagtaaaaactataggacaccaatgatactgaagctatgaatatactgactatgaagacctatgctttgactcctacataatcccaaccaatgacctaaaaccaggtgaacttcgtctattagaagttgataatcgggtagtcttaccaatagaacttccaattcgtatactaatctcatccgaagacgtcctgcactcatgagccatcccttcactagggttaaaaaccgacgcaatccccggccgcctaaaccaagctacagtcacatcaaaccgaccaggtctattctatggccaatgctctgaaatttgcggctcaaatcacagcttcatacccattgtactagaaatagtgcctctaaaatatttcgaaaactgatcagcttctataatttaaactcattgcgaagcttagagcgttaaccttttaagttaaagttagagacaacaaatctccacaatgacatgccacaactagacacatccacatgatttattacaatcatctcctcaatagccacactatttattttatttcaattaaaaatttcttcccaaacctttcctgcacctccctcacccaaaactatagccacagaaaaaacgaataacccttgagaatcaaaatgaacgaaaatctatttgcctctttcattacccccacaataataggtctaccaattgttgtgaccattattatgttcccatcaattctattcccatcatcagaacgcctaatcagcaaccgactacactcatttcaacactgactaatcaaacttatcatcaaacaaataatgttaattcacacaccaaaaggacgaacctgagccctaataattgtatccctaattatatttattggctcaaccaaccttctagggcttcttccccatacatttacccctaccactcagctatctatagacctaagcatagccatccccctatgagcaggagccgtaattctaggtttccgacacaaactaaaaaattctttagcccacttctcaccgcaaggaacccccatctcactaattcccatactaatcatcatcgaaactatcagcctatttattcaaccgatagcactagcagtacgactaacagcaaacattacagcaggccatctattaatgcatctaatcggaggagctaccctagtacttatagacatcagcccaccaaccgctacaattacatttattattctacttctacttacagtacttgaatttgccgtagccttaattcaagcctatgtattcacccttctagtcagcctgtacctacatgataacacataatgacccaccaaacccatgcataccatatagtaaacccaagcccatgaccactaacaggagccctatcagctcttctactcacatccggcttagtaatatgattccattacaactccacaattctcctatcattaggcctcctgacaaacatcctaactatatatcaatgatgacgagatatcatccgtgaaggaacataccaaggccaccacacccctattgtacaaaaaggcctccgatacggaataatcctgtttattgtctccgaagtattcttctttgccggatttttctgagcattttatcattccagcctagttcctacccacgacctaggcggttgctgacccccaacaggaatcacccctttaaatcccctagaagtaccccttctaaatacatcagtcctcttagcatcaggagtctcaattacatgagcccatcacagcctaatagaaggcaaccgaaaccatataaaccaagccctactaatcaccattctcttaggattatatttcactatcttacaagcctcagagtatttcgaaacatcattttctatctcagacggaatttacggctcaacattcttcatagcaacgggatttcatggcctccacgtaattattggctcaactttcctaattgtctgtctactacgacaactaaaattccacttcacatcaaaacatcatttcggatttgaagccgcagcatgatactgacacttcgtagatgtagtttgactattcctatacgtttctatctattgatgaggatcctactcccttagtataaacaatacaactgacttccaatcagttaattctgaaaaaactcagaagagagtaattaacctacccattatcatcacaattaacatcaccttatcctttatcctcatttcaattgcattctgattgcctcaaataaacttatactccgaaaaagcaaacccatatgaatgtggcttcgacccaacaagttctgcacgccttcctttttcaataaaatttttcttagtagccattacatttctactattcgacctagaaatcgccttactacttcccctcccatgagcgattcaaacaaccaataccactacaataatagcaactgcctttattttagtcactattttgtctcttggcctagcctacgaatgaacacaaaaaggactagaatgaacagaataattggtaattagtttaaataaaattaatgatttcgactcattagattatgataataatcataattaccaacaatgacatctgctttcctaaatttaactatagcctttacattatctctactaggtacttttatatttcgctcccacctaatatccactctcctctgcctagaaggaataatactatcactatttgtcataacttcaacatccacattaaactccaactccataatctccataaccatcccaattaccattctagtttttgcagcctgcgaagcagcagtaggtttagccttactagtaaaaatttcaaatacttacggaacagactacgtacaaaacctcaaccttctacaatgttaaaaattattttcccatctatcatactcctcccactaacatgactctcagccaacaaaaaaatctgaaccaatgtcacctcctacagctttctagtgagcctattaagcttatcactcctatgacaaaatgacgaaaattacctaaatttctcagttatattctcctccgatccattatccaccccactaatcattctaacaacttgactcctcccactaataatgctcgctagccaaaatcacataaaaaaagaaaatataatgcatcaaaaactttacatctcaatacttattagcctccaaattttactcatcataacattctccgcaacagaactaattttattttatatcctgttcgaggccactctaatcccaacactaattatcattacacgatgaggcaaccaaacagaacgcttaaatgcaggaatttatttcctgttttatacactaattggctccatcccactcttaattgccctcatttcaatccaaaactcaataggaacactcaacttcctaatcctttccctcacaacacaccccctaccctcaacatgatccaacaccattctatgactagcatgtataatagcatttataatcaaaataccattatacggagtccatctatgattaccaaaagcccacgtagaagctccaattgcaggctctataattttagcagcaattctcctaaagctagggggttatgggataatacgagtttccatcattctagaccccctaacaaaatctttagcctacccattcatcatcctctcattatgaggcataattataactagctcaatctgcctacgccaaacagatctaaaatcattaattgcttactcatcagtaagccatatagccctagtcatcacagccattataatccagacaccatgaagcttcatgggagccacaatactaataatcgcccacggcttaacctcatcactcttattctgcctagcaaacaccaactacgaacgaattcacagccgaactataattatagctcgaggattacaaataatctttccattgatagcaacatgatgactattagcaagcttagccaacctagcactaccacccctaattaacctcataggcgagttattcattgttatagcaacattttcctgatcgaacccctctatcatccttatagcaactaacattgtcatcacaggaatatactcaatatatatgattatcacaacccaacgaggaaaactaaccagccacataaacaacctccaaccttcccacacacgagaattaacactcatagctctacacattattcccctcatactattaacaatcaaccctaaactcatcacaggcctaacaatatgtagatatagtttacaaaaaacattagactgtgaatctaacaacaggaaatcaaattccttatttaccaagaaagtatgcaagaactgctaattcatgcacccatacctaaaacatatggctttcttacttttataggatagaagtaatccattggtcttaggaaccaaaaaccttggtgcaactccaaataaaagtaataaatataataacaatcctaatcctcataattcttgatttacttacaacaccaatcacattttcaataacaatcttaaccaaacttatgtacttccgtcatatgctcattacatcaattaaattctcattcctccttagcctcttacctttactactattcttccaccacaacacagaatacataattactaactgacattgactaactattaattctattaaacttactataagtttcaaaattgactatttctcaatcctattcctatcagtatccctattcgtaacatgatcaattatacaattctcttcatgatatatacactctgacccccacattaaccgattcattaagtacttaataatattcctgaataacatactaatcctaacctcagctaacaatctattccaactctttattggatgagaaggggtaggaattatatccttcttattaatcggatgatgatatggccttgcagacgccaacacagcggccctccaagcaatcctctacaaccgagtcggagacattggtttcatcctagctataacctgattctgcctaaacataaactcctgagaactccaacaaattttcttaaccaacaccaacaacaatctagtccctctcacaggactactaattgcagccacaggaaaatccgcccaattcggacttcatccatgactcccatcagctatagaaggcccaactcccgtctctgccctactacactcaagcacaatagttgtagcagggatcttcctaataatccgattccaccccctaacctcaaacaatagtactattataacagccatactatgtcttggtgcaatcaccacattattcacagcaatctgtgctctcacccaaaacgacatcaaaaaaatcgtagctttctcaacatccagccaactaggccttataatagtcacattagggattaaccaaccctaccttgctttcctccacatttgcacccatgcattcttcaaagccatattattcatatgctccggatcaatcatccatatcctcaacgatgaacaagacattcgaaaaataggcaatataataaaagcaataccattcacatcatcttgtctcattatcggaagcctagcccttaccggaatacctttcctcacaggattctattcaaaagatctcatcatcgaagccatcaacacgtgtaacaccaacgcctgagccctaataatcactttaatcgccacatccataactgctgtgtacagcatacggatcatctacttcgtcaccatgacaaaaccacgatactccccactaattactattaatgaaaacaacccaaacctcattaatccaatcaaacgcctagcattaggaagcatcctagcaggcttccttatctcactaaatattcctccaactaacattcaaattctcacaataccctgacatttaaaaataacagccctacttattacaatcctaggatttgccattgccctagaacttaacaatttaacactaaatctatcaataagcaaacccaccaaactatcatcattctcaacctccctaggctactacccaccaattataccccgaattattcctcaaaaaactctaaattctagctacaaattatccttaaacctactagacctaatctgatcagaaaagacaatcccaaaatcaacctcaatcacccaaacccaactatctaaaataatatccaaccaaaaaggactaatcaaactatatttcctatcatttctcatcactatttcactaatttttatcttacacacacttaatcccgagtgatttcaataataataaaaatccccgcaaacaatgaccacccagccaccactatcattcaagtagcacaactataaatagccgcaaccccaatccccccctccaacataaccccaacatcatcaatctcatacattaatcaatcgcctagactatcaaaatcaactaactccaccttattattcaaactaaacaagtagaacactaccaactccataaaaagccctaaaacaaaaaaactaaaaataaaccaattagaccctcaagtttccggatattcctcagtagccatagcagttgtatacccaaatacaaccaacatcccacccaaataaattaaaaatactattaaacctaaaaacgaacccccaaaccctaaaactattaagcacccaatacatccactaacaatcaatccaaacccaccataaataggtgaaggcttcaacgccaaccctagacaaccagtcaaaaacagtaaacttaaaataaacatataatttgtcattatttctacacagcatttaactgtgactaatgacatgaaaaatcatcgttgtaattcaactatagaaacatctaatgacaaacatccgaaaatctcaccccctattcaaaatcatcaaccactcctttatcgacctaccggccccatctaacatctcatcatgatgaaacttcggttctctactaggagtatgcctcatagtacaaatcctcacaggcttattcctagcaatacactacacgtctgataccataacagcattctcatcagtcacccacatctgccgagacgtaaactacggctgactaatccgatacctacaagccaacggcgcctcaatatttttcatctgcctattcctccatgtgggacgaggactatactatggatcctacactttcctagaaacctgaaacattgggatcatcctactatttgcagtcatagcaactgcattcatgggctatgtactcccatgaggacaaatatcattctgaggagctacagtaattacaaacctattatcagctatcccttacattgggactaccctagtcgaatgaatctgaggaggcttctcagtagacaaagcaaccctaacacgcttcttcgcattccacttcatcctcccattcattatcgccgcccttgcaattgtacatcttcttttcctccacgaaacaggatcaaataaccccacaggattaaactccgacgcagacaaaatcccattccatccatattatacaattaaagacctcctaggtgtatttatattactattattcctaataaccctagtactattcttcccagacctactaggagacccagacaattatacacccgctaaccccctcaacaccccaccccacatcaaaccagaatgatactttctctttgcctacgctattctacgctccattcccaacaaactaggaggggtcgtagccctaatcttatcaatcctaatcttagccttcctaccattcctgcatacctcaaaacaacgcagcttaacattccgcccaatcacccaaatcctttactgaatcctagtagccaacctcctagtcttaacatgaatcggaggccaaccagtagaacacccatttatcattattggtcaactagcctccatcagttatttttcaattatcctcattctcataccaatctctggaattgttgaagacaaaatgttaaaatgaaattaatgtcccgatagtataaaaattactctggtcttgtaaaccaaaaatgaagagtcagtcttctcaggacaatcaagaagaaggaactacctccccaccatcaacacccaaagctgatattctacttaaactacttcttgtcagtacataaaatgatatggacattaaaacatttatgtatatcgtacattaaattattttccccaagcatataagcatgtaatatatatctaatgatttaggacatacatttaaactcaactataaattcacaacaacatgtctattctcaaatacattaagataatgcttattagacatatctgtgttattagacatgcaccattaagtcataaacctttctcttccatatgactatccctgtccccaattggtctctatttctaccatcctccgtgaaatcaacaacccgcccactcgtccccctcttctcgctccgggcccattcgtcctgggggtgactatactgaaactttaccaggcatctggttcttacttcagggccatcaattggttcatcgtccatacgttccccttaaataagacatctcgatggtaacgggtctaatcagcccatgatcaacataactgtggtgatatacatttggtattttttaattttcggatgccttcctcaacatagccgtcaaggcatgaaggtcagcacaaagtcctgtggaaccttttagttaagggtcatttatcctcatagacaaagctcgaaagactattttattcatgtttgtaagacataaatatttataaatactgaaaaatctgtcaacaaacccccccaccccctacacctgaaacttcaatgccaaaccccaaaaacattaaagcaagaattaaataaaacaaaaagctacttaattcttaaaaggcttctccattctagtagaccacaaaattttaacttaaatcttagcattggtaaaatttcccgacacaaaatctttcctcctaactaaaccctctttacttgcctaccctcagaaaattccacatacaccaaa
data/ext/Makefile ADDED
@@ -0,0 +1,167 @@
1
+
2
+ SHELL = /bin/sh
3
+
4
+ #### Start of system configuration section. ####
5
+
6
+ srcdir = .
7
+ topdir = /usr/lib/ruby/1.8/i386-linux
8
+ hdrdir = $(topdir)
9
+ VPATH = $(srcdir)
10
+ prefix = $(DESTDIR)/usr
11
+ exec_prefix = $(prefix)
12
+ sitedir = $(prefix)/local/lib/site_ruby
13
+ rubylibdir = $(libdir)/ruby/$(ruby_version)
14
+ builddir = $(ac_builddir)
15
+ archdir = $(rubylibdir)/$(arch)
16
+ sbindir = $(exec_prefix)/sbin
17
+ compile_dir = $(DESTDIR)/tmp/ruby1.8-1.8.1+1.8.2pre2/build-tree/ruby-1.8.2
18
+ datadir = $(prefix)/share
19
+ includedir = $(prefix)/include
20
+ infodir = $(prefix)/info
21
+ top_builddir = $(ac_top_builddir)
22
+ sysconfdir = $(DESTDIR)/etc
23
+ mandir = $(datadir)/man
24
+ libdir = $(exec_prefix)/lib
25
+ sharedstatedir = $(prefix)/com
26
+ oldincludedir = $(DESTDIR)/usr/include
27
+ sitearchdir = $(sitelibdir)/$(sitearch)
28
+ bindir = $(exec_prefix)/bin
29
+ localstatedir = $(DESTDIR)/var
30
+ sitelibdir = $(sitedir)/$(ruby_version)
31
+ libexecdir = $(exec_prefix)/libexec
32
+
33
+ CC = gcc
34
+ LIBRUBY = $(LIBRUBY_SO)
35
+ LIBRUBY_A = lib$(RUBY_SO_NAME)-static.a
36
+ LIBRUBYARG_SHARED = -l$(RUBY_SO_NAME)
37
+ LIBRUBYARG_STATIC = -l$(RUBY_SO_NAME)-static
38
+
39
+ CFLAGS = -fPIC -Wall -g -O2 -fPIC
40
+ CPPFLAGS = -I. -I$(topdir) -I$(hdrdir) -I$(srcdir)
41
+ CXXFLAGS = $(CFLAGS)
42
+ DLDFLAGS =
43
+ LDSHARED = gcc -shared
44
+ AR = ar
45
+ EXEEXT =
46
+
47
+ RUBY_INSTALL_NAME = ruby1.8
48
+ RUBY_SO_NAME = $(RUBY_INSTALL_NAME)
49
+ arch = i386-linux
50
+ sitearch = i386-linux
51
+ ruby_version = 1.8
52
+ ruby = /usr/bin/ruby1.8
53
+ RUBY = $(ruby)
54
+ RM = $(RUBY) -run -e rm -- -f
55
+ MAKEDIRS = $(RUBY) -run -e mkdir -- -p
56
+ INSTALL_PROG = $(RUBY) -run -e install -- -vpm 0755
57
+ INSTALL_DATA = $(RUBY) -run -e install -- -vpm 0644
58
+
59
+ #### End of system configuration section. ####
60
+
61
+
62
+ LIBPATH = -L"$(libdir)"
63
+ DEFFILE =
64
+
65
+ CLEANFILES =
66
+ DISTCLEANFILES =
67
+
68
+ target_prefix =
69
+ LOCAL_LIBS =
70
+ LIBS = $(LIBRUBYARG_SHARED) -lpthread -ldl -lcrypt -lm -lc
71
+ OBJS = Quartet.o TreeScore.o
72
+ TARGET = CompLearn
73
+ DLLIB = $(TARGET).so
74
+ STATIC_LIB = $(TARGET).a
75
+
76
+ RUBYCOMMONDIR = $(sitedir)$(target_prefix)
77
+ RUBYLIBDIR = $(sitelibdir)$(target_prefix)
78
+ RUBYARCHDIR = $(sitearchdir)$(target_prefix)
79
+
80
+ CLEANLIBS = "$(TARGET).{lib,exp,il?,tds,map}" $(DLLIB)
81
+ CLEANOBJS = "*.{o,a,s[ol],pdb,bak}"
82
+
83
+ all: $(DLLIB)
84
+ static: $(STATIC_LIB)
85
+
86
+ clean:
87
+ @$(RM) $(CLEANLIBS) $(CLEANOBJS) $(CLEANFILES)
88
+
89
+ distclean: clean
90
+ @$(RM) Makefile extconf.h conftest.* mkmf.log
91
+ @$(RM) core ruby$(EXEEXT) *~ $(DISTCLEANFILES)
92
+
93
+ realclean: distclean
94
+ install: $(RUBYARCHDIR)
95
+ install: $(RUBYARCHDIR)/$(DLLIB)
96
+ $(RUBYARCHDIR)/$(DLLIB): $(DLLIB) $(RUBYARCHDIR)
97
+ @$(INSTALL_PROG) $(DLLIB) $(RUBYARCHDIR)
98
+ install: $(RUBYLIBDIR)/CompLearnLib
99
+ install: $(RUBYLIBDIR)/CompLearnLib/CompressionObject.rb
100
+ $(RUBYLIBDIR)/CompLearnLib/CompressionObject.rb: $(srcdir)/lib/CompLearnLib/CompressionObject.rb $(RUBYLIBDIR)/CompLearnLib
101
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/CompressionObject.rb $(RUBYLIBDIR)/CompLearnLib
102
+ install: $(RUBYLIBDIR)/CompLearnLib/CompressionTask.rb
103
+ $(RUBYLIBDIR)/CompLearnLib/CompressionTask.rb: $(srcdir)/lib/CompLearnLib/CompressionTask.rb $(RUBYLIBDIR)/CompLearnLib
104
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/CompressionTask.rb $(RUBYLIBDIR)/CompLearnLib
105
+ install: $(RUBYLIBDIR)/CompLearnLib/FoundComp.rb
106
+ $(RUBYLIBDIR)/CompLearnLib/FoundComp.rb: $(srcdir)/lib/CompLearnLib/FoundComp.rb $(RUBYLIBDIR)/CompLearnLib
107
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/FoundComp.rb $(RUBYLIBDIR)/CompLearnLib
108
+ install: $(RUBYLIBDIR)/CompLearnLib/DistMatrix.rb
109
+ $(RUBYLIBDIR)/CompLearnLib/DistMatrix.rb: $(srcdir)/lib/CompLearnLib/DistMatrix.rb $(RUBYLIBDIR)/CompLearnLib
110
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/DistMatrix.rb $(RUBYLIBDIR)/CompLearnLib
111
+ install: $(RUBYLIBDIR)/CompLearnLib/Ncd.rb
112
+ $(RUBYLIBDIR)/CompLearnLib/Ncd.rb: $(srcdir)/lib/CompLearnLib/Ncd.rb $(RUBYLIBDIR)/CompLearnLib
113
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/Ncd.rb $(RUBYLIBDIR)/CompLearnLib
114
+ install: $(RUBYLIBDIR)/CompLearnLib/RunEnv.rb
115
+ $(RUBYLIBDIR)/CompLearnLib/RunEnv.rb: $(srcdir)/lib/CompLearnLib/RunEnv.rb $(RUBYLIBDIR)/CompLearnLib
116
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/RunEnv.rb $(RUBYLIBDIR)/CompLearnLib
117
+ install: $(RUBYLIBDIR)/CompLearnLib/Task.rb
118
+ $(RUBYLIBDIR)/CompLearnLib/Task.rb: $(srcdir)/lib/CompLearnLib/Task.rb $(RUBYLIBDIR)/CompLearnLib
119
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/Task.rb $(RUBYLIBDIR)/CompLearnLib
120
+ install: $(RUBYLIBDIR)/CompLearnLib/TaskMaster.rb
121
+ $(RUBYLIBDIR)/CompLearnLib/TaskMaster.rb: $(srcdir)/lib/CompLearnLib/TaskMaster.rb $(RUBYLIBDIR)/CompLearnLib
122
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/TaskMaster.rb $(RUBYLIBDIR)/CompLearnLib
123
+ install: $(RUBYLIBDIR)/CompLearnLib/TaskMasterMPI.rb
124
+ $(RUBYLIBDIR)/CompLearnLib/TaskMasterMPI.rb: $(srcdir)/lib/CompLearnLib/TaskMasterMPI.rb $(RUBYLIBDIR)/CompLearnLib
125
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/TaskMasterMPI.rb $(RUBYLIBDIR)/CompLearnLib
126
+ install: $(RUBYLIBDIR)/CompLearnLib/TaskMasterSingle.rb
127
+ $(RUBYLIBDIR)/CompLearnLib/TaskMasterSingle.rb: $(srcdir)/lib/CompLearnLib/TaskMasterSingle.rb $(RUBYLIBDIR)/CompLearnLib
128
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/TaskMasterSingle.rb $(RUBYLIBDIR)/CompLearnLib
129
+ install: $(RUBYLIBDIR)/CompLearnLib/Tree.rb
130
+ $(RUBYLIBDIR)/CompLearnLib/Tree.rb: $(srcdir)/lib/CompLearnLib/Tree.rb $(RUBYLIBDIR)/CompLearnLib
131
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/Tree.rb $(RUBYLIBDIR)/CompLearnLib
132
+ install: $(RUBYLIBDIR)/CompLearnLib/CLConfig.rb
133
+ $(RUBYLIBDIR)/CompLearnLib/CLConfig.rb: $(srcdir)/lib/CompLearnLib/CLConfig.rb $(RUBYLIBDIR)/CompLearnLib
134
+ @$(INSTALL_DATA) $(srcdir)/lib/CompLearnLib/CLConfig.rb $(RUBYLIBDIR)/CompLearnLib
135
+ $(RUBYARCHDIR):
136
+ @$(MAKEDIRS) $(RUBYARCHDIR)
137
+ $(RUBYLIBDIR)/CompLearnLib:
138
+ @$(MAKEDIRS) $(RUBYLIBDIR)/CompLearnLib
139
+
140
+ site-install: install
141
+
142
+ .SUFFIXES: .c .cc .m .cxx .cpp .C .o
143
+
144
+ .cc.o:
145
+ $(CXX) $(CXXFLAGS) $(CPPFLAGS) -c $<
146
+
147
+ .cpp.o:
148
+ $(CXX) $(CXXFLAGS) $(CPPFLAGS) -c $<
149
+
150
+ .cxx.o:
151
+ $(CXX) $(CXXFLAGS) $(CPPFLAGS) -c $<
152
+
153
+ .C.o:
154
+ $(CXX) $(CXXFLAGS) $(CPPFLAGS) -c $<
155
+
156
+ .c.o:
157
+ $(CC) $(CFLAGS) $(CPPFLAGS) -c $<
158
+
159
+ $(DLLIB): $(OBJS)
160
+ @-$(RM) $@
161
+ $(LDSHARED) $(DLDFLAGS) $(LIBPATH) -o $(DLLIB) $(OBJS) $(LOCAL_LIBS) $(LIBS)
162
+
163
+ $(STATIC_LIB): $(OBJS)
164
+ $(AR) cru $@ $(OBJS)
165
+ @-ranlib $(DLLIB) 2> /dev/null || true
166
+
167
+ distdir:
OSZAR »